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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTACTCATTGCAATACATTGGCGTATAGTAGCTCTAAGGGCTCCATTCGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACAATCATTCCCAAATgtgagcttttatttcacactaacatatactctacttggagaatatcaagtgaatactgcccttctcaattatcctataagtttcgttgtactatttctatacctgttgtcttcttgtag

Basic information

species Zea mays
transcript GRMZM2G142334_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 8
ATCCTACTCATTGCAATACATTGGCGTATAGTAGCTCTAAGGGCTCCATTCGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACAATCATTCCCAAATgtgagcttttatttcacactaaca----tatactctacttggagaatatcaagtgaatactgcccttctcaattatcctataagtttcgttgtactattt-ctatacctgttgtcttcttgtag------
| |||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||| |||| |||||||||| |||||| ||| ||||   ||| | |    | | |  || |      |  | |  || ||      ||  |  |||  ||| |    |||||  || | |||  |||| || ||    |  | |        
ACCCTACTCACTGTAATACATTGGCTTATAGTAGCTCAAAGGGCTCCATTCGACTTGTTGACCTGAGGCAGTCAGCCCTTTGTGACACTCATTCCCAAGTgtgagttttcatttgttactcatactctttttcaatattcaacatagtttatttggatgagcatctggtggattggcctgtcttgttcgtactattttttattatagctattcctattctatgtgtgtag

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G20830.2 (Glycine max), 5'ss of exon 8
ATCCTACTCATTGCAATACATTGGCGTATAGTAGCTCTAAGGGCTCCATTCGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACAATCATTCCCAAATgtgagcttttatttcacac-taacatatactctacttggaga--atatcaagtgaatactgcccttctcaattatcctataagtttcgttgtactatttctatacctgttgtcttcttgtag
| ||||| ||||| ||||||||||| ||||| || || ||||| || ||||| ||||||||  ||||||| |||||  | || ||   |||| || || ||| |||||  ||||  |   |   || |  | | |||   |   | | | |   | ||      ||     ||||     ||   |    |     |   |                     
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagcttacattttgcttatgttatttgttttccttatggcttacacctaacaagtaacaaagttga-ggttattggggaaaaattaaagggaagtagat---------------------

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 8
ATCCTACTCATTGCAATACATTGGCGTATAGTAGCTCTAAGGGCTCCATTCGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACAATCATTCCCAAATgtgagcttttatttcacactaacatatactctacttggaga--atatcaagtgaatactgcccttctcaattatcctataagtttcgttgtactatttctatacctgttgtcttcttgtag
| ||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||||||  ||||||| |||||  | || ||   |||| || || ||| |||| |  |||     |   || |  | |  ||   |   | | | ||  |||  ||   ||           |  |||    || | |  ||||   |                   
ACCCTACACATTGTAATACATTGGCATATAGCAGCTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagctatcttttgcttatgttatttgttttcattatggcttacacccagc-aatgttgaggttgatgggggaaattaaagggaagtag-ataatttgatt-------------------

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 8
ATCCTACTCATTGCAATACATTGGCGTATAGTAGCTCTAAGGGCTCCATTCGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACAATCATTCCCAAATgtgag--cttttatttcacactaacatatactctacttggagaatatcaagtgaatactgcccttctcaattatcctataagtttcgttgtactatttctatacctgttgtcttcttgtag
| ||||| ||||| ||||||||||| ||||| || || ||||| || || || ||||||||  |||||||||||||  | || ||   |||| || || ||| ||  | ||  |||     || | ||| |  | | ||  ||||   ||||  || |    | || ||     | |  |   |||        ||||  | |  |||||           
ACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTgtaagtacattcttttgtggttatcttattcgtt-cctgacgaat---aagt--atcccattcctcccataaggctttcagtcttca------gattttaacaaatgttgaa---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32806442|gb|CD958676.1|CD958676
EST:     CGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACACTCATTCCCAAAT                         CTTTGAACAGCATGAGGCCCCAGGTTCAAGATCATTTTTCACTGAGATTAT
genomic: CGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACAATCATTCCCAAATgtgagctttt ... cttcttgtagCTTTGAGCAGCATGAGGCCCCAGGTTCAAGATCATTTTTCACTGAGATTAT
EST: gi|67016408|gb|CO445157.1|CO445157
EST:     CGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACACTCATTCCCAAAT                         CTTTGAACAGCATGAGGCCCCAGGTTCAAGATCATTTTTCACTGAGATTAT
genomic: CGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACAATCATTCCCAAATgtgagctttt ... cttcttgtagCTTTGAGCAGCATGAGGCCCCAGGTTCAAGATCATTTTTCACTGAGATTAT
EST: gi|6020391|gb|AW065319.1|AW065319
EST:     CGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACACTCATTCCCAAAT                         CTTTGAGCAGCATGAGGCCCCAGGTTCAAGATCATTTTTCACTGAGATTAT
genomic: CGACTTGTTGATCTGCGGCAATCAGCCCTTTGCGACAATCATTCCCAAATgtgagctttt ... cttcttgtagCTTTGAGCAGCATGAGGCCCCAGGTTCAAGATCATTTTTCACTGAGATTAT