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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACATAGCAGCTTTGTTACAGAACTCCAGTGATGGGGGCAACTATCAAAAAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactcatgatagttacattttttttctcgaaaagctcatgatagttacatgagtagtgctaaaatagctagcagcttaaattaataggtatggat...

Basic information

species Zea mays
transcript GRMZM2G137968_T03
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101387980|gb|EB816004.1|EB816004
EST:     AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAG                         GAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
EST: gi|78119202|gb|DV537586.1|DV537586
EST:     AAGCACTTGAATGTTTTGCTTCTTTGCGGAAGGCCTGTATTATTGAACAG                         GAACCCCAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
EST: gi|71442228|gb|DR823278.1|DR823278
EST:     AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAG                         GAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
EST: gi|29544272|gb|CB604652.1|CB604652
EST:     AAGCCCTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAG                         GAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
EST: gi|71766539|gb|DR964476.1|DR964476
EST:     AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAG                         GAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
EST: gi|31909355|gb|CD650877.1|CD650877
EST:     AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAG                         GAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
EST: gi|71762207|gb|DR960144.1|DR960144
EST:     AAGCACTTGAATGTTTTGCTTTTTTGCGGAAGGCCTGTATTATTGAACAG                         GAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG
genomic: AAGCACTTGAATGTTTTGCTTCTCTGCGGAAGGCCTGTATTATTGAACAGgtaagcactc ... ccgtgatcagGAACCACAGGAATTCAACCAGTTCCTAACGAAGATTTACGAGAGATTGAAG