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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgatttatcgcaactgtgtcatctcaacacgtatcctcgtttcgaccttcaagctaaccgcccagcaatgtgttgttcttccatccacag

Basic information

species Zea mays
transcript GRMZM2G137930_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 8
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgatttatcgca--actgtgtcatctcaacacgtatcctcgtttcgac---cttcaagctaaccgcccagcaatgtgttgttcttccatccacag
||||||||||||||||||||||||||||||| |||||||| || || || || || |||||||| |||||| ||||||| |||| |||   |   | |||  | |    || |  |      ||  | || |  |    | ||||||| ||  |  | | |||| |  |  | |||| ||   
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtacttcacttgcataagtactacaacatactgtacatgtttgtgtaaaatcacatcaagctgact-cttaaccatgt-tgatgttgccattcag--

upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA13G19500.2 (Glycine max), 5'ss of exon 8
-------ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttg-atttatcgcaactgtg-tcatctcaacacgtatcctcgtttcgaccttca--agctaaccgcccagcaatgtgttgttcttccatccacag------------------------------------------------------------------------------------------------
       |||||||||||||||||||||| ||||| ||||| |||||||| || ||    || || |||||||| ||  |||| || |||||||| | |   |||  |    || |||    | |   | |  ||  ||      |    |  | | | |        ||    || |  |||                                                                                                      
GAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag

upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA13G19500.4 (Glycine max), 5'ss of exon 7
------------------ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttg-atttatcgcaactgtg-tcatctcaacacgtatcctcgtttcgaccttca--agctaaccgcccagcaatgtgttgttcttccatccacag------------------------------------------------------------------------------------------------
                  |||||||||||||||||||||| ||||| ||||| |||||||| || ||    || || |||||||| ||  |||| || |||||||| | |   |||  |    || |||    | |   | |  ||  ||      |    |  | | | |        ||    || |  |||                                                                                                      
TCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag

upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 8
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttg-atttatcgcaactgtg-tcatctcaacacgtatcctcgtttcgaccttca--agctaaccgcccagcaatgtgttgttcttccatccacag------------------------------------------------------------------------------------------------
|||||||||||||||||||||| ||||| ||||| |||||||| || ||    || || |||||||| ||  |||| || |||||||| | |   |||  |    || |||    | |   | |  ||  ||      |    |  | | | |        ||    || |  |||                                                                                                      
ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag

upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G05130.1 (Glycine max), 5'ss of exon 8
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttg-atttatcgcaactgtg-tcatctcaacacgt--atcctcgtttcgaccttcaagctaaccgcccagcaatg-tgttgttcttccatccacag---------------
|||||||||||||||||||||| ||||| ||||| |||||||| || ||    || || |||||||| ||  |||| || ||||||||   |   |||| |    || | || ||||    |  ||  |  |    |  ||     | |  || ||  |||| | |     ||  | ||                   
ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATgtaagtaacagccatcggattcatgattatttcaaggtttcaattttaatacttatgtttttattcat-gcgcaagaatgatatgaagtttaaaacctttttattttgttgtgaag

upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G05130.2 (Glycine max), 5'ss of exon 7
------------------ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttg-atttatcgcaactgtg-tcatctcaacacgt--atcctcgtttcgaccttcaagctaaccgcccagcaatg-tgttgttcttccatccacag---------------
                  |||||||||||||||||||||| ||||| ||||| |||||||| || ||    || || |||||||| ||  |||| || ||||||||   |   |||| |    || | || ||||    |  ||  |  |    |  ||     | |  || ||  |||| | |     ||  | ||                   
CCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATgtaagtaacagccatcggattcatgattatttcaaggtttcaattttaatacttatgtttttattcat-gcgcaagaatgatatgaagtttaaaacctttttattttgttgtgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37377074|gb|CF625109.1|CF625109
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|91870587|gb|EB400969.1|EB400969
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|211164202|gb|FL365728.1|FL365728
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCG
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCG
EST: gi|21760122|gb|BQ635663.1|BQ635663
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGCAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|60345089|gb|DN212062.1|DN212062
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|89252994|gb|DY624780.1|DY624780
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|32845833|gb|CD985514.1|CD985514
EST:     AACGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGATCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|78109928|gb|DV528343.1|DV528343
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|60400269|gb|DN233076.1|DN233076
EST:     AACGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGATCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|78116468|gb|DV534855.1|DV534855
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTTTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|71761130|gb|DR959067.1|DR959067
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|21432147|gb|BQ547637.1|BQ547637
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATC
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATC
EST: gi|60400610|gb|DN233417.1|DN233417
EST:     AACGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGATCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|60352136|gb|DN219109.1|DN219109
EST:     AACGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGATCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|6973370|gb|AW438064.1|AW438064
EST:     AACGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGATCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|60396637|gb|DN229505.1|DN229505
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|33104183|gb|CF064143.1|CF064143
EST:     AACGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGATCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|60393905|gb|DN226775.1|DN226775
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|71441944|gb|DR822994.1|DR822994
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|76923128|gb|DV169344.1|DV169344
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|22546627|gb|BU098938.1|BU098938
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCT
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCT
EST: gi|60394081|gb|DN226951.1|DN226951
EST:     AACGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGATCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|60397937|gb|DN230753.1|DN230753
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|71445656|gb|DR826706.1|DR826706
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|91870563|gb|EB400947.1|EB400947
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|74035433|gb|DT535921.1|DT535921
EST:     AACGACTTTCTACCAGCGAGCGCCCCTTATGAAGCCATACAGCACTCTAT                         GGATCTGTATGCTACATACATCGTTGAGGGCCTGAAGGAAGGTAG
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGA-GGA-GGTAG
EST: gi|31405950|gb|CD484682.1|CD484682
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGAAATCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|76287732|gb|DV027300.1|DV027300
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|19822092|gb|BQ048116.1|BQ048116
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|76287731|gb|DV027299.1|DV027299
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTTTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|20301303|gb|BQ164246.1|BQ164246
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|60395705|gb|DN228575.1|DN228575
EST:     AACGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGATCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|71445655|gb|DR826705.1|DR826705
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|71758865|gb|DR956802.1|DR956802
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|37397100|gb|CF635845.1|CF635845
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|60401073|gb|DN233880.1|DN233880
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|71444626|gb|DR825676.1|DR825676
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTTTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|60342157|gb|DN209130.1|DN209130
EST:     AACGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGATCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|22133615|gb|BQ833806.1|BQ833806
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTG
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTG
EST: gi|71444627|gb|DR825677.1|DR825677
EST:     AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA
EST: gi|91870562|gb|EB400946.1|EB400946
EST:     AATGACTTTTTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTAT                         GGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTTTGA
genomic: AATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgat ... ccatccacagGGACCTGTATGCTACATACATCGTTGAGGGCCTGAGGAGGTAGGATTCTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgatttatcgcaactgtgtcatctcaacacgtatcctcgtttcgaccttcaagctaaccgcccagcaatgtgttgttcttccatccacag

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