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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttccacatgataaatgcttagtgtttcttcctcaccagatctttttttttgtgtgtgtaaaaaatgccttcaaattagtaattttttgtaacct...

Basic information

species Zea mays
transcript GRMZM2G134770_T04
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5005812|gb|AI711874.1|AI711874
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|71428348|gb|DR809398.1|DR809398
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|89248611|gb|DY620397.1|DY620397
EST:     GAAAACCAGGGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GAAAACCAGGGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|12970927|gb|BG267228.1|BG267228
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|32943442|gb|CF048261.1|CF048261
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|28910525|gb|CB331482.1|CB331482
EST:     AAACCAGGGATCTAAGCCTGATGG-TTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAG-GTGAGCAG-GCAATAACATAA
genomic: AAACCAGGGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|94474683|gb|EB703641.1|EB703641
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|78112738|gb|DV531132.1|DV531132
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|32841271|gb|CD980952.1|CD980952
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|32839908|gb|CD979589.1|CD979589
EST:     GGATCTAAGTCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGC
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGC
EST: gi|74243768|gb|DT651682.1|DT651682
EST:     ACCAGGGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACCCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: ACCAGGGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|88752563|gb|DY536704.1|DY536704
EST:     GGATTTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTGGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|211158909|gb|FK993540.1|FK993540
EST:     GGWTCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCWATKACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|32841323|gb|CD981004.1|CD981004
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|32835369|gb|CD975047.1|CD975047
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|32840727|gb|CD980408.1|CD980408
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|78026571|gb|DV494958.1|DV494958
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|31350190|gb|CD434547.1|CD434547
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGGGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|32841497|gb|CD981178.1|CD981178
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|89247194|gb|DY618980.1|DY618980
EST:     GGATCTAAGCCTGATGGTTTAAGAGGGTCAA                         AACCAAAGACACCAGAGGGCAGTGGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttccacatgataaatgcttagtgtttcttcctcaccagatctttttttttgtgtgtgtaaaaaatgccttcaaattagtaattttttgtaacct

- - - - - - - - - - AAGAGG