1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttccacatgataaatgcttagtgtttcttcctcaccagatctttttttttgtgtgtgtaaaaaatgccttcaaattagtaattttttgtaacct...
species | Zea mays |
transcript | GRMZM2G134770_T03 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|71428348|gb|DR809398.1|DR809398
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|89248611|gb|DY620397.1|DY620397
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GAAAACCAGGGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|12970927|gb|BG267228.1|BG267228
genomic: GAAAACCAGGGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|32943442|gb|CF048261.1|CF048261
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|28910525|gb|CB331482.1|CB331482
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: AAACCAGGGATCTAAGCCTGATGG-TTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAG-GTGAGCAG-GCAATAACATAAEST: gi|94474683|gb|EB703641.1|EB703641
genomic: AAACCAGGGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|78112738|gb|DV531132.1|DV531132
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|32841271|gb|CD980952.1|CD980952
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|32839908|gb|CD979589.1|CD979589
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGTCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCEST: gi|74243768|gb|DT651682.1|DT651682
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGC
EST: ACCAGGGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACCCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|88752563|gb|DY536704.1|DY536704
genomic: ACCAGGGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATTTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTGGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|211158909|gb|FK993540.1|FK993540
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGWTCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCWATKACATAAEST: gi|32841323|gb|CD981004.1|CD981004
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|32835369|gb|CD975047.1|CD975047
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|32840727|gb|CD980408.1|CD980408
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|78026571|gb|DV494958.1|DV494958
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|31350190|gb|CD434547.1|CD434547
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGGGCAGTGCAATAACATAAEST: gi|32841497|gb|CD981178.1|CD981178
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|89247194|gb|DY618980.1|DY618980
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGCCTGATGGTTTAAGAGGGTCAA AACCAAAGACACCAGAGGGCAGTGGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttcc ... attttgatagAACCAAAGACACCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCTAAGCCTGATGGTTTAAGAGGGTCAAgtaagtttccacatgataaatgcttagtgtttcttcctcaccagatctttttttttgtgtgtgtaaaaaatgccttcaaattagtaattttttgtaacct
- - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaaa