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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGCTCGGACAGATTCTGTCGAAACATGCATTGAAGCCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAAgtaagcttatcttgtgggcagagtccaggtctcttgaggatagtaattttgctgaaagttgttgacacatgtttgtgcttccctccactccag

Basic information

species Zea mays
transcript GRMZM2G132866_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132866_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g06840.2 (Oryza sativa), 5'ss of exon 9
CAACGCTCGGACAGATTCTGTCGAAACATGCATTGAAGCCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAAgtaagcttatcttgtgggcagagtccaggtctcttgaggatagtaattttgctga----aagttgttgacacatgtttgtgctt-----ccctccactccag
|||| || ||||||||| | || || |||||||||||||| ||||| || || |||||||||||||||||||||||| || | || |||||||   |||   |||    |  |      |  |||  ||      ||| ||      | |   |  | |  || |     ||     ||||   ||||||
CAACACTTGGACAGATTTTATCTAATCATGCATTGAAGCCCAGAGTATATATTGGATGCATGAAATCTGGACCTGTCCTAACTGAGAAgtaagtgcatcacatggttttaa-ctgttctttctgacaatgtctcctttccttttctcatgccctcaaaatttgctaagttttgttaacccttgtctccag

upper sequence: GRMZM2G132866_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA06G46230.2 (Glycine max), 5'ss of exon 8
CAACGCTCGGACAGATTCTGTCGAAACATGCATTGAAGCCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAAgtaagcttatcttgtgggcagagtccaggtctcttgaggatagtaattttgctgaaagttgttgacacatgtttgtgcttccctccactccag
|||| || ||||| | |||    |  |||  ||  || ||  |  | ||||| ||||||||||||||||| |||||| ||||| |||||| ||   ||  | |   |   ||     |    |     || |||   | ||   | ||||||   |    |||  || |  |      |||
CAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgagaaaatgatttt--ctttgtttttattgaattgaattattaaagct-ctttgacttgttgcttctaacttgccctactttgttgcacag

upper sequence: GRMZM2G132866_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 8
CAACGCTCGGACAGATTCTGTCGAAACATGCATTGAAGCCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAAgtaagcttatcttgtgggcagagtc--caggtctcttgaggatagtaattttgctgaaagttgttgacacatgtttgtgcttccctccactccag
|||| || ||| | | |||    | ||||  ||  || ||  |  | ||||| ||||||||||||||||| |||||| ||||| |||||| ||     ||| |        |       |    | |  | || | |||  |    || |  | ||    |    | |||   | ||      
CAACACTGGGAGAAACTCTAGTTAGACATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgagaaatgcttatttttgtttttattgaattgaattactaaagcactttgacctgtagcttctaacctgagaa-atactttgttgcag-----

upper sequence: GRMZM2G132866_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT4G26940.2 (Arabidopsis thaliana), 5'ss of exon 8
CAACGCTCGGACAGATTCTGTCGAAACATGCATTGAAGCCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAAgtaagct---tatcttgtgggcagagtccaggtctc----ttgaggatagt---aattttg-------ctgaaagttgt--tgacacatgtttgtgcttccctccactccag-------------------------------------------------
| ||||| |||       |  | | | |     |||||||  |||||||||| || ||||||||||||||||||||  |  |  | ||||||| |    | |||      |||| |||   |||    || | | | ||   | |||         |||||| ||    |   | | |  || | |  | |  || | |                                                  
CCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACCTGTTCTTGCTCAGAAgtaagttgttcaccttccttcaagagaccactcctcatttttaatgtttgtctcactttcatctctctctgaaatttccaattttagaggagtgagatatcatgaacccgaatactggaaatttggagaagagggtaacaaatacttccgccatgccacag

upper sequence: GRMZM2G132866_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT4G26940.1 (Arabidopsis thaliana), 5'ss of exon 8
CAACGCTCGGACAGATTCTGTCGAAACATGCATTGAAGCCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAAgtaagct---tatcttgtgggcagagtccaggtctcttgaggatagtaattttgctgaaagttgttgacacatgtttgtgcttccctccactccag
| ||||| |||       |  | | | |     |||||||  |||||||||| || ||||||||||||||||||||  |  |  | ||||||| |    | |||      |||| |||   ||| |     |  |||| ||  |     |   |  ||  | | | ||       | | |  ||
CCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACCTGTTCTTGCTCAGAAgtaagttgttcaccttccttcaagagaccactcctcat-----ttttaatgtttgtc----tcactttcatctctctctgaaatttccaattttag

upper sequence: GRMZM2G132866_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv19s0090g00560.t01 (Vitis vinifera), 5'ss of exon 8
CAACGCTCGGACAGATTCTGTCGAAACATGCATTGAAGCCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAAgtaagcttatcttgtgggcagagtccaggtctcttgaggatagtaattttgctgaaagttgttgacacatgtttgtgcttccctccactccag
|||| || |||   | | |  |||  ||    |  || || ||  | ||||| |||||||||||||||||||||||  || |  |||||||||   |  || |    |   | ||    ||||   |||||  ||||     | || |  | | |  | | |||   |||||      |||
CAACACTGGGAGCAACTTTAGCGAGGCACCGTTCAAAACCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAAgtaagac-acattcttataattcttca----tctttcagatag--attt---caagagattctaaaatgtttctgtttctcccttatgaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211309888|gb|FL092753.1|FL092753
EST:     CCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAA                         GGCCGTGAGATATTATGAACC
genomic: CCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAAgtaagcttat ... tccactccagGGGCGTGAGATATTATGAACC
EST: gi|33101737|gb|CF061697.1|CF061697
EST:     CCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAA                         GGGCGTGAGATATTATGAACCCGAGCACTGGAAATTCGGCGAATCGGGGAA
genomic: CCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAAgtaagcttat ... tccactccagGGGCGTGAGATATTATGAACCCGAGCACTGGAAGTTCGGCGAATCGGGGAA