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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCTGCTAGCCCACAGCGCGCTCCATGGCGCCATGGCGGGGTACACCGGCTTCATCGTCGCTCCGGTCAATGGCAGACACGCCTACATCCCGTTCTATgtaagtcgagggtcttgtgcttgtgcagttgagcttcctggacatccggtcttggatcctggataaacccttctcttgttttgcag

Basic information

species Zea mays
transcript GRMZM2G132069_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132069_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 5'ss of exon 10
CACTCTGCTAGCCCACAGCGCGCTCCATGGCGCCATGGCGGGGTACACCGGCTTCATCGTCGCTCCGGTCAATGGCAGACACGCCTACATCCCGTTCTATgtaagtcgagggtcttgtgcttgtgcagttgagcttcc-tggaca------tccggtcttggatcctggata--aacccttctcttgttttgcag---------------------------
||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||| ||||| || ||||||||||| ||||||| ||     | |  ||      |  | |||   ||  ||      | | ||  |  |  |  || |  |||| |   ||  |  |   |                           
CACCCTGCTAGCTCACAGCGCCCTCCACGGCGCCATGGCGGGGTACACCGGCTTCACCGTCGCGCCGGTCAACGGCAGGCACGCGTATATCCCGTTCTACgtaagtccagaacactctttttcaatgatcaatctttagtgttcagttcagttcagttcttcacaccagacatcaaccatatcctgataatctggacactgaaactccggcgatttctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|84969698|gb|DW468127.1|DW468127
EST:     GCTTCATCGTCGCTCCGGTCAATGGCAGACACGCCTACATCCCGTTCTAT                         AGGATCACCGAGAAGCAGAACAAGGTGGTGATCACGGACCGGATGTGGGCG
genomic: GCTTCATCGTCGCTCCGGTCAATGGCAGACACGCCTACATCCCGTTCTATgtaagtcgag ... tgttttgcagAGGATCACCGAGAAGCAGAACAAGGTGGTGATCACGGACCGGATGTGGGCG
EST: gi|28982496|gb|BQ538192.2|BQ538192
EST:     GCTTCATCGTCGCTCCGGTCAATGGCAGACACGCCTACATCCCGTTCTAT                         AGGATCACCGAGAAGCAGAACAAGGTGGTGATCACGGACCGGATGTGGGCG
genomic: GCTTCATCGTCGCTCCGGTCAATGGCAGACACGCCTACATCCCGTTCTATgtaagtcgag ... tgttttgcagAGGATCACCGAGAAGCAGAACAAGGTGGTGATCACGGACCGGATGTGGGCG
EST: gi|76016888|gb|DT944058.1|DT944058
EST:     GCTTCATCGTCGCTCCGGTCAATGGCAGACACGCCTACATCCCGTTCTAT                         AGGATCACCGAGAAGCAGAACAAGGTGGTGATCACGGACCGGATGTGGGCG
genomic: GCTTCATCGTCGCTCCGGTCAATGGCAGACACGCCTACATCCCGTTCTATgtaagtcgag ... tgttttgcagAGGATCACCGAGAAGCAGAACAAGGTGGTGATCACGGACCGGATGTGGGCG