Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAACTGAGGGAAATGAAGCCAGGCATGCTGTCTCGTGAGCTTAAAGATGCTCTTGGTATGCCTGATGGCGCCCCTCCCCCATGGCTTATAAACATGCAGgtttgttcttttaatctgaatttcagatgttctcctattgataatgcctctgttactggataacttggatcaatgtacaatgttccag

Basic information

species Zea mays
transcript GRMZM2G132060_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132060_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA13G25110.1 (Glycine max), 5'ss of exon 9
TAAACTGAGGGAAATGAAGCCAGGCATGCTGTCTCGTGAGCTTAAAGATGCTCTTGGTATGCCTGATGGCGCCCCTCCCCCATGGCTTATAAACATGCAGgtttgttcttttaatctgaatttcagatgttct--cctattgataatgcctctgttactggat-aacttggatcaatgtacaatgttccag
 ||  |||| || ||||| || |||||| | || | |||  | ||||| ||||||||||||||||| || || ||||| ||||||||||| || ||||||||    ||  |   | ||        ||||| |   ||  || |  || | || | |    || || ||   |||                
AAAGTTGAGAGAGATGAAACCTGGCATGTTATCACATGAATTAAAAGAAGCTCTTGGTATGCCTGAGGGTGCTCCTCCACCATGGCTTATTAATATGCAGgtaatatcagtgtctttgtggcatgtatgttgtattcttctggtcttggccctttcataacatcaatttttttcaccag------------

upper sequence: GRMZM2G132060_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA15G07760.1 (Glycine max), 5'ss of exon 9
TAAACTGAGGGAAATGAAGCCAGGCATGCTGTCTCGTGAGCTTAAAGATGCTCTTGGTATGCCTGATGGCGCCCCTCCCCCATGGCTTATAAACATGCAGgtttgttcttttaatctgaatttcagatgttctcctattgataatgcctctgttactggataacttggatcaatg--tacaatgttccag
 ||  ||||||| ||||| || |||||||| || |  ||  | ||||| ||||||||||||||||| || || ||||| || |||||||| || ||||||||    | || ||  ||    |||   ||||    | || ||| |   |||||| ||||     ||    || |   ||   | || |||
GAAGTTGAGGGAGATGAAACCTGGCATGCTATCACAGGAATTGAAAGAAGCTCTTGGTATGCCTGAAGGTGCTCCTCCTCCTTGGCTTATTAATATGCAGgt--aatattatagcct---cttc---tgttgcatttttcatattat-tctgttcctggcctttttaccccattaaatatgttttttcag

upper sequence: GRMZM2G132060_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA07G31350.1 (Glycine max), 5'ss of exon 5
TAAACTGAGGGAAATGAAGCCAGGCATGCTGTCTCGTGAGCTTAAAGATGCTCTTGGTATGCCTGATGGCGCCCCTCCCCCATGGCTTATAAACATGCAGgtttgttcttttaatctgaatttcagatgttct--cctattgataatgcctctgttactggat-aacttggatcaatgtacaatgttccag
 ||  ||||||| ||||| || |||||| | || | |||  | ||||| ||||||||||| ||||| || || ||||| ||||||||||| || ||||||||    ||  |   | ||        ||||| |   ||  || |  || | || | |    || || ||   |||    |           
AAAGTTGAGGGAGATGAAACCTGGCATGTTATCACATGAATTAAAAGAAGCTCTTGGTATACCTGAGGGTGCTCCTCCACCATGGCTTATTAATATGCAGgtaatatcagtgtctttgtggcatgtatgttgtattcttctggtcctggccctttcataacatcaatttttttcaccagag----------

upper sequence: GRMZM2G132060_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT4G21660.1 (Arabidopsis thaliana), 5'ss of exon 8
TAAACTGAGGGAAATGAAGCCAGGCATGCTGTCTCGTGAGCTTAAAGATGCTCTTGGTATGCCTGATGGCGCCCCTCCCCCATGGCTTATAAACATGCAGgtttgttcttttaatctgaatttcagatgttctcctattgataatgcctctgttactggataacttggatcaatgtacaatgttccag
|||||||||||||| ||| |||||  |  ||||    ||  | ||||| ||||||||||||||||| ||||| |||||||||||||| || |||||||||||  |||  ||    || |  ||   |  |  ||  ||||  |  |  |   | ||     | ||    |   |  |||         
TAAACTGAGGGAAACGAAACCAGGGTTTTTGTCAAACGACTTAAAAGAAGCTCTTGGTATGCCTGAAGGCGCTCCTCCCCCATGGCTGATTAACATGCAGgtgagtttattgtgacttatctttttaattattctgattggaatcgagttgttcacctttaatctc---ttctttgacag--------

upper sequence: GRMZM2G132060_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv00s0818g00010.t01 (Vitis vinifera), 5'ss of exon 1
TAAACTGAGGGAAATGAAGCCAGGCATGCTGTCTCGTGAGCTTAAAGATGCTCTTGGTATGCCTGATGGCGCCCCTCCCCCATGGCTTATAAACATGCAGgtttgttcttttaatctgaatttcagatg-ttctcctattgataatgcctctg---ttactggataacttggatcaatgtacaatgttccag
 || || ||||| |||||||| || ||| |||| |  ||||| ||||| |||||||||||||| || ||||| ||||||||||||||||| |||||||||||  | |    |||| |   |  ||  || || |    || | |   |||      ||  |   |   || | | | |||  | | || |||
AAAGCTAAGGGAGATGAAGCCGGGTATGTTGTCACAGGAGCTAAAAGAAGCTCTTGGTATGCCAGAGGGCGCACCTCCCCCATGGCTTATCAACATGCAGgtcagatgagctaatttc--tcgcaattgattttgacctttacagaaccttcaactttgttttttcctttagctgactgttta-tttttcag

upper sequence: GRMZM2G132060_T01 (Zea mays), 5'ss of exon 8
lower sequence: PP1S505_13V6.1 (Physcomitrella patens), 5'ss of exon 9
TAAACTGAGGGAAATGAAGCCAGGCATGCTGTCTCGTGAGCTTAAAGATGCTCTTGGTATGCCTGATGGCGCCCCTCCCCCATGGCTTATAAACATGCAGgtttgttcttttaatctgaatttcagatgttct-----------cctattgataatgcctctgttactggat----aacttggatcaatgtacaatgttccag--------------------------------------
 ||| | ||||| ||||| || |||  ||| || |  || ||||| || |||||||| ||||| ||||| || |||||||| |||||||| |||||||||||  ||   |||    | ||||||   || | |            || ||  |  ||  || || | |  ||    ||| | ||    ||||  | ||   |                                       
CAAATTAAGGGAGATGAAACCTGGCCAGCTATCCCAGGAACTTAAGGAAGCTCTTGGCATGCCAGATGGTGCGCCTCCCCCTTGGCTTATCAACATGCAGgtgcgtggctttg-cttaaatttcttgtgctttaaggaagcatgtctgtttcttttgagtc-gtcattatatctctaaccttgacgtttgtaatacgtctgaaatgcaaatcttagtttttattcctctgttttactgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51592523|gb|CV071669.1|CV071669
EST:     CTCTTGGTATGCCTGATGGCGCCCCTCCCCCATGGCTTATAAACATGCAG                         CGCTAGGGTCCACCTCCATCTTATCCCCAACTGAAGATCCCAGGTCTAAAT
genomic: CTCTTGGTATGCCTGATGGCGCCCCTCCCCCATGGCTTATAAACATGCAGgtttgttctt ... aatgttccagCGCTATGGTCCACCTCCATCTTATCCCCAACTGAAGATCCCAGGTCTAAAT