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TTTGGGATAAGATCTGCAGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACTACATATTATAGAGgtatcttttttgcacggcttttatcaaattatttgtaactatgaaaaaaggttagaccgaggcttccacatgagtctccccctgcaaatgcggagaggct...
species | Zea mays |
transcript | GRMZM2G129554_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACTACATATTATAGAG GCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAAEST: gi|211412133|gb|FL450831.1|FL450831
genomic: CAGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACTACATATTATAGAGgtatcttttt ... ttctttttagGCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAA
EST: AGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACTCACATATTATAGAG GCATTCAACGCAAGGCTATTTGATTATTTAATAGCAACGGATGACACTAAAEST: gi|31349879|gb|CD434236.1|CD434236
genomic: AGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACT-ACATATTATAGAGgtatcttttt ... ttctttttagGCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAA
EST: CAGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACTACATATTATAGAG GCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAAEST: gi|87155790|gb|DY400579.1|DY400579
genomic: CAGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACTACATATTATAGAGgtatcttttt ... ttctttttagGCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAA
EST: CCACAAAATTCCCGACTACATATTATAGAG GCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAAEST: gi|78122698|gb|DV541082.1|DV541082
genomic: CCACAAAATTCCCGACTACATATTATAGAGgtatcttttt ... ttctttttagGCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAA
EST: CAGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACTACATATTATAGAG GCATTCAACGCAGGGCTATTTGATTATCTAATAGCAACGGATGACACTAAAEST: gi|32933916|gb|CF038728.1|CF038728
genomic: CAGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACTACATATTATAGAGgtatcttttt ... ttctttttagGCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAA
EST: CAGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACTACATATTATAGAG GCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAAEST: gi|26560161|gb|CA832396.1|CA832396
genomic: CAGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACTACATATTATAGAGgtatcttttt ... ttctttttagGCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAA
EST: ACAAAATTCCCGACTACATATTATAGAG GCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAAEST: gi|32935293|gb|CF040105.1|CF040105
genomic: ACAAAATTCCCGACTACATATTATAGAGgtatcttttt ... ttctttttagGCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAA
EST: CAGTTTTGAATGCTGAGTTGCCACAAAATTCCCGGCTACATATTATAGAG GCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAA
genomic: CAGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACTACATATTATAGAGgtatcttttt ... ttctttttagGCATTCAACGCAAGGCTATTTGATTATCTAATAGCAACGGATGACACTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGGATAAGATCTGCAGTTTTGAATGCTGAGTTGCCACAAAATTCCCGACTACATATTATAGAGgtatcttttttgcacggcttttatcaaattatttgtaactatgaaaaaaggttagaccgaggcttccacatgagtctccccctgcaaatgcggagaggct
- - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc