Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGCCAAGGTGCTAAGCTTTTGAACATACTAGCTAAATACTGTGAAGgtaaatattgaactatgacacttttgttaaggaaactatatttatgccctataattgctagaattgcctattactttcctgtgttgtgcttttatattttgagcattaaataacctgtgtatactgtag

Basic information

species Zea mays
transcript GRMZM2G129155_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G129155_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g69130.2 (Oryza sativa), 5'ss of exon 8
GCTGGCCAAGGTGCTAAGCTTTTGAACATACTAGCTAAATACTGTGAAGgtaaatattgaactatgac-acttttgttaaggaaactatatttatgccctataattgc---tagaattgcctattactt----tcctgtgttgtgcttttatattttgagcattaaataacctgtgtatactgtag
||||| ||||||||||||||||||||||| || || || |||||||||||||| | |||||  ||||| |  | || |    |   |  | | |||  | ||  |  |   ||  | ||  ||| | |     ||||||||| |  |||                                     
GCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAGgtaatttttgaatcatgactaactgtgctggcaatttttaaataatggtcaattgtgccatttaatactgtgtatgattaaaagtcctgtgttatttttt-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32832868|gb|CD972546.1|CD972546
EST:     GCTGGCCAAGGTGCTAAGCTTTTGAACATACTAGCTAAATACTGTGAAG                         CTTTCTCCTCAATGGTGGAAGGAAAAAATGAAGATATATCGACAATTGAAC
genomic: GCTGGCCAAGGTGCTAAGCTTTTGAACATACTAGCTAAATACTGTGAAGgtaaatattg ... tatactgtagCTTTCTCCTCAATGGTGGAAGGAAAAAATGAAGATATATCGACAATTGAAC