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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGCGAACTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatacttctcgactgtaactcaattcgctgtatttagtcatgcggaagtggaacttatctggtccgcccattttgcag

Basic information

species Zea mays
transcript GRMZM2G128748_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013115_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g50750.2 (Oryza sativa), 5'ss of exon 8
------TGAGGCGAACTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatacttctcgactgtaactcaattcgctgtatttagtcatgcggaagtggaacttatctggtccgcccattttgcag
        ||||||||  |||||||||||||||| |||||||||||||| |||||||| |||||||| || ||||  |  ||||| ||||        ||| |    | |||   |  |   ||||||    | | | | ||||| ||
TTTCAGCTAGGCGAACCAGTAGCTGGTGTTTCGATGAGAAAGTTCTGATACAGTCACTTTACAAGgtaattatacaccctgactg-aacttgtcagattgtctcagattatg---attt---acttatactatgcccac-ttttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211197860|gb|FL096645.1|FL096645
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211200406|gb|FL096659.1|FL096659
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211197859|gb|FL096644.1|FL096644
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGNATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211200403|gb|FL096656.1|FL096656
EST:     AGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: AGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211118801|gb|FL096628.1|FL096628
EST:     GTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: GTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211118805|gb|FL096632.1|FL096632
EST:     GAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: GAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|74242220|gb|DT650134.1|DT650134
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211118799|gb|FL096626.1|FL096626
EST:     AGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: AGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211200399|gb|FL096652.1|FL096652
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211197854|gb|FL096639.1|FL096639
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211200398|gb|FL096651.1|FL096651
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211118800|gb|FL096627.1|FL096627
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211118794|gb|FL096621.1|FL096621
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211200397|gb|FL096650.1|FL096650
EST:     GTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GNTATGGNTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: GTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211197863|gb|FL096648.1|FL096648
EST:     CTGGTAGCTGGTGTTTCGACNAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211118802|gb|FL096629.1|FL096629
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211200405|gb|FL096658.1|FL096658
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211118797|gb|FL096624.1|FL096624
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211200402|gb|FL096655.1|FL096655
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211200396|gb|FL096649.1|FL096649
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
EST: gi|211118796|gb|FL096623.1|FL096623
EST:     CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG                         GTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT
genomic: CTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAGgtgatcatac ... cattttgcagGTTATGGTTTCTGTATCTGAAAACGGTCCGATTATTCTTTACATAAGGGAT