Sequence
atgc intronic sequence ATGC exonic sequenceATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtaccaaataacttccctctacatcatacttaatggcgttcttttttttcttcttctgatcaaatcttgtgtctttctattggatttcctggaaca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G128688_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 5'ss of exon 8
ATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtaccaaataacttccctctacatcatacttaatggcgttcttttttttcttcttctgatcaaatcttgtgtctttctattggatttcctggaaca-
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ATTTTGACTGCCCTTCCTACAATTGAGTTGGACCCTCCCACAATATCTATGACTTTTGGTGTGAATGATTCACCACTGTCTGGCCGCGATGGCACTCATgtaagtagcaaacaattaacctagacatcaaagtgttcctatttattcctcatattgttttcattgtcctttttg-cttttgatgaaaattcatgcatatt
upper sequence: GRMZM2G128688_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 8
ATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtaccaaataacttccctctacatcatacttaatggcgttcttttttttcttcttctgatcaaatc---ttgtgtctttctattggatttcctggaaca
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ATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCATgtaagtggtgt-ttgttatattttac-ttactttcttttccctccttcagttgcttgtgtaaaaaacattgggttgggtatgcttctcaaatcccacctcag-
upper sequence: GRMZM2G128688_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT2G31060.3 (Arabidopsis thaliana), 5'ss of exon 8
ATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtaccaa-ataacttccctctacatca-tacttaatg----gcgttcttttttttcttcttctgatcaaatcttgtgtctttctattggatttcctggaaca
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GTCACAACTGCACTCCCTACTGTTGAGTTAGATCCACCAACAATTTCTATGACGTTTGGTGTCAATGACTCTCCGTTGGCTGGTCAGGATGGCACCCACgtatgtttaattatagtgacaagatatagctctagtcattactctgcattaaacttttacatcctcagatttaccttcgggtcactgcatttctttttca------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32802027|gb|CD954263.1|CD954263EST: TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCAT CTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT
genomic: TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtacca ... aattttgcagCTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtaccaaataacttccctctacatcatacttaatggcgttcttttttttcttcttctgatcaaatcttgtgtctttctattggatttcctggaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctac