Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtaccaaataacttccctctacatcatacttaatggcgttcttttttttcttcttctgatcaaatcttgtgtctttctattggatttcctggaaca...

Basic information

species Zea mays
transcript GRMZM2G128688_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128688_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 5'ss of exon 8
ATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtaccaaataacttccctctacatcatacttaatggcgttcttttttttcttcttctgatcaaatcttgtgtctttctattggatttcctggaaca-
|| |||| ||| || ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||  || ||||||| ||||||||||||||||||| |||| || |  |||  |||||| | |        || ||  |  | || || | ||      || || ||||  ||   | ||| || |    
ATTTTGACTGCCCTTCCTACAATTGAGTTGGACCCTCCCACAATATCTATGACTTTTGGTGTGAATGATTCACCACTGTCTGGCCGCGATGGCACTCATgtaagtagcaaacaattaacctagacatcaaagtgttcctatttattcctcatattgttttcattgtcctttttg-cttttgatgaaaattcatgcatatt

upper sequence: GRMZM2G128688_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 8
ATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtaccaaataacttccctctacatcatacttaatggcgttcttttttttcttcttctgatcaaatc---ttgtgtctttctattggatttcctggaaca
||  ||  |||| |||| ||| |||| ||||| ||||| ||||| || ||||| ||||| || || || || ||  | |||||||| ||||||||||||||||||      |   |    | ||| | |   |   |  | | |||   || ||| |    |  | ||    ||| || |   | |   ||  |     |  
ATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCATgtaagtggtgt-ttgttatattttac-ttactttcttttccctccttcagttgcttgtgtaaaaaacattgggttgggtatgcttctcaaatcccacctcag-

upper sequence: GRMZM2G128688_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT2G31060.3 (Arabidopsis thaliana), 5'ss of exon 8
ATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtaccaa-ataacttccctctacatca-tacttaatg----gcgttcttttttttcttcttctgatcaaatcttgtgtctttctattggatttcctggaaca
 |    | ||| || |||||  ||||||| ||||| || ||||| |||||||||||||| || ||||| || ||||||||||| | ||||||||| || ||| ||   |  |||    |    || | |  || | | |     || ||    |||| | || || |||  |   | | |||  |  |||   ||| |       
GTCACAACTGCACTCCCTACTGTTGAGTTAGATCCACCAACAATTTCTATGACGTTTGGTGTCAATGACTCTCCGTTGGCTGGTCAGGATGGCACCCACgtatgtttaattatagtgacaagatatagctctagtcattactctgcattaaacttttacatcctcagatttaccttcgggtcactgcatttctttttca------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211333808|gb|FL249504.1|FL249504
EST:     TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCAT                         CTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT
genomic: TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtacca ... aattttgcagCTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT
EST: gi|211333809|gb|FL249505.1|FL249505
EST:     TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCAT                         CTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT
genomic: TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtacca ... aattttgcagCTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT
EST: gi|32802027|gb|CD954263.1|CD954263
EST:     TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCAT                         CTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT
genomic: TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtacca ... aattttgcagCTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT