1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAAGTATGACCTGTACAGCAAGAGCAACAGCAGGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAGgtatgcatctgtaatgtatccacgcatttatttggcgtcgtcggctgaatcagaaccagaaccacgttctcatatagtgatctgagcttacttgtctgaattcttgtttttttttccctgcag
species | Zea mays |
transcript | GRMZM2G126900_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAG TACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCTEST: gi|31363556|gb|CD447913.1|CD447913
genomic: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAGgtatgcatct ... ttccctgcagTACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCT
EST: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAG TACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCTGGCCTG-CCTGGACCEST: gi|78119916|gb|DV538300.1|DV538300
genomic: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAGgtatgcatct ... ttccctgcagTACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGC-GGCCTGGCCTGGACC
EST: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAG TACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCTEST: gi|60396286|gb|DN229155.1|DN229155
genomic: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAGgtatgcatct ... ttccctgcagTACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCT
EST: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAG TACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCTEST: gi|14996932|gb|BI319072.1|BI319072
genomic: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAGgtatgcatct ... ttccctgcagTACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCT
EST: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAG TACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCTEST: gi|15057218|gb|BI361190.1|BI361190
genomic: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAGgtatgcatct ... ttccctgcagTACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCT
EST: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAG TACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCTEST: gi|45847402|gb|CN071345.1|CN071345
genomic: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAGgtatgcatct ... ttccctgcagTACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCT
EST: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAG TACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCTEST: gi|14996904|gb|BI319057.1|BI319057
genomic: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAGgtatgcatct ... ttccctgcagTACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCT
EST: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAG TACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCTEST: gi|211354362|gb|FL217076.1|FL217076
genomic: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAGgtatgcatct ... ttccctgcagTACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGGCGGCCTGGCCTGGACCT
EST: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAG TACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGG
genomic: GGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAGgtatgcatct ... ttccctgcagTACTTCCCGGCCAAGCTAAGATGGTGAGAAGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGTATGACCTGTACAGCAAGAGCAACAGCAGGATCGACGTGGAGGAGGTGAAGCCCTACTACATGTCCCTAATCGACAAGgtatgcatctgtaatgtatccacgcatttatttggcgtcgtcggctgaatcagaaccagaaccacgttctcatatagtgatctgagcttacttgtctgaattcttgtttttttttccctgcag
- - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC