Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATTGATAGTGCTGGCTTAAGTGGTCCTATACCATCATCATTTTCGAAACTTACACGATTGAAAACATTgtatatccattagacacattttttcaatagtattgttctatgccactcaacgttatatgttattccactttttgtttag

Basic information

species Zea mays
transcript GRMZM2G126858_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 5'ss of exon 7
GTACATTGATAGTGCTGGCTTAAGTGGTCCTATACCATCATCATTTTCGAAACTTACACGATTGAAAACATTgtatatccatta---gacacatttttt--caatagta-ttgttctatgccactcaacgttatatgttattccactttttgtttag
||||||||| ||||||||||||||||||||  |||||||||||||||| || |||||| || || ||||||||||     |  |   ||    ||| ||    | | || || |||  ||||| | ||| || | | |||| |  || ||| || ||
GTACATTGACAGTGCTGGCTTAAGTGGTCCACTACCATCATCATTTTCCAAGCTTACAAGAATGCAAACATTgtaggattacaaaaggatgtgtttcttgttgacattaattcttccgtgccattaaacattgtttcttatcctcctatttcttcag

upper sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 5'ss of exon 7
GTACATTGATAGTGCTGGCTTAAGTGGTCCTATACCATCATCATTTTCGAAACTTACACGATTGAAAACATTgtatatccattagaca----cattttttcaatagtattgttctatgccactcaacgttatatgttattccactttttgtttag----
||||||||| ||||||||||||||||||||  ||||||||||||| || || |||||| || || ||| ||||||   | |  | | |    | | || |    | || ||||| |||||| | ||  || | | ||||    | |||| |||      
GTACATTGACAGTGCTGGCTTAAGTGGTCCGTTACCATCATCATTGTCCAAGCTTACAAGAATGCAAATATTgtacgactacaaaaaaatgtcttcttgttggcattaatgttccatgccattaaaaattgtttcttatatgtccttttatttgttcag

upper sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g52630.1 (Oryza sativa), 5'ss of exon 6
GTACATTGATAGTGCTGGCTTAAGTGGTCCTATACCATCATCATTTTCGAAACTTACACGATTGAAAACATTgtatatccattagacacattttttcaatagtattgttct---atgccactcaacgttatatgtt----attccactttttgtttag
||||||||| ||||||||||||||||||    |||||||||||||||| || ||||||  | || ||| ||||||   |  | | | || | || | | |   |||  |||   || ||| | ||  ||||  |||    || |   |  ||||||||
GTACATTGACAGTGCTGGCTTAAGTGGTGAGCTACCATCATCATTTTCCAAGCTTACAAAAGTGGAAAAATTgtaggcctctaatatacgtattcttattgaaattaatctcccataccattaaatcttatgggttgtatatccttttcgttgtttag

upper sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g52640.3 (Oryza sativa), 5'ss of exon 7
GTACATTGATAGTGCTGGCTTAAGTGGTCCTATACCATCATCATTTTCGAAACTTACACGATTGAAAACATTgtatatccattagacacatttttt-----caatagtattgttctatgcc----actcaacgttatatgttat-tccactttttgtttag
|| |||||| |||||||||||||||||     ||||||||||||| || || |||||| || |||||| ||||||||  | |   | | ||||  |       | | || ||||| || ||    | | ||  |||| |  | | ||   |  ||||| ||
GTTCATTGACAGTGCTGGCTTAAGTGGAGAGCTACCATCATCATTATCCAAGCTTACAAGAATGAAAATATTgtataaacttacaaaatatttggtatagctgacattaatgttccattccataaattaaatcttatgtcctgtatcttttacttgttcag