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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTTAACCCAGATTGTGCCACATTAGAAACAACAATTCTTGATACATTACATATAATGCATGATGGCAAATTCTTGCATATTCCTGTTATTGACAAAGgtgccaactgatttctgtcctcatctttgactatcgtactgctactttatatgctacaagtttaaagtcttcattattgtaaatag

Basic information

species Zea mays
transcript GRMZM2G126656_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126656_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os12g07190.1 (Oryza sativa), 5'ss of exon 8
ACTGTTAACCCAGATTGTGCCACATTAGAAACAACAATTCTTGATACATTACATATAATGCATGATGGCAAATTCTTGCATATTCCTGTTATTGACAAAGgtgccaactgatttctgtcctcatctttgactatcgtactgctactttatatgctacaagtttaaagtct--tcattattgtaaatag----------
||||| |||||||||| ||| |||||||| || |||||||||||| |  ||||||||||||||||||| || |||||||||||||||||| ||||   ||||     || |||  ||||      |   |  |    | |   |    || | ||   | ||||   | |  |  || |  || ||            
ACTGTAAACCCAGATTTTGCTACATTAGACACGACAATTCTTGATGCTCTACATATAATGCATGATGGAAAGTTCTTGCATATTCCTGTTCTTGATCGAGgtagagccttattcatgtctctgcgtcccaaaaggacaataacaaagcatcttctgggactttattatttgatgcttgtcttacattttcctcaacag

upper sequence: GRMZM2G126656_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA05G32930.1 (Glycine max), 5'ss of exon 8
ACTGTTAACCCAGATTGTGCCACATTAGAAACAACAATTCTTGATACATTACATATAATGCATGATGGCAAATTCTTGCATATTCCTGTTATTGACAAAGgtgccaactgatttctgtcctcatctttgactatcgtactgctactttatatgctacaagtttaaagtcttcattattgtaaatag-----
|||   ||||||||||||||  || |||| ||||| || || ||| |  | ||||| ||||||||||| |||||||| ||| |||||||  | |||||||||| ||  |  |||      |   |    | | || ||   ||  | | | ||     | |    |||  | | | || |   |       
ACTCCAAACCCAGATTGTGCATCAGTAGATACAACGATACTGGATTCTCTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtgacatttatttttccaattttgcaggcagtctcctaagtcttatctttttgtactgactactgagtgctgacttttattgtttatgcag

upper sequence: GRMZM2G126656_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 8
ACTGTTAACCCAGATTGTGCCACATTAGAAACAACAATTCTTGATACATTACATATAATGCATGATGGCAAATTCTTGCATATTCCTGTTATTGACAAAGgtgccaactgatttctgtcctcatctttgactatcgtactgctactttatatgctacaagtttaaagtcttcattattgtaaatag-----
|||   ||||||||||||||  || |||| ||||| || || ||| || | ||||| ||||||||||| |||||||| ||| |||||||  | |||||||||  ||  |  |||      |        | | || || | ||  | | | ||     | |    |||  | | | || |   |       
ACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtaacatttacttttccaattttgtaggcagtctcctaattcttatatttttgtactgactactgagtgctgacttttattgtttatgcag