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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATATgtgagtagtaaattacagtattttacttaatatctttacatttttcatgagatgaacttttagtgatgacttgatccaccgttccatcgatgagcttcta...

Basic information

species Zea mays
transcript GRMZM2G126517_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126517_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os08g39420.1 (Oryza sativa), 5'ss of exon 8
GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATATgtgagtagtaaa--------ttacagtattttacttaatatctttacatttttcatgagatgaacttttagtgatgacttgatccaccgttccatcgatgagcttcta
||||||||||| ||||||||||| |||||||||||||| ||||||||| |||| ||||        ||||   || |   || |||||| ||   |||    || ||    ||    ||     |||   ||  | |||||  |          
GTGCCATGTCGCGTTGATTCTCCCGAAGAGTGTGCCAAGATAATATgtaagtattaaagttcgcatttaccccatctgtattcatatctgtatcatttgtgcgatattggtttgacatgcactgttggcacat-gatccattaaccc-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67038503|gb|CO464823.1|CO464823
EST:     GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATAT                         ATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTTCT-ATTGCAGTACCG
genomic: GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATATgtgagtagta ... tgtcatgcagATGCAAACAAGAACCTACGTCTTGGTTCTGGGATT-CTTATTGCAGTACCG
EST: gi|149082843|gb|EE172069.2|EE172069
EST:     GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATAT                         ATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
genomic: GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATATgtgagtagta ... tgtcatgcagATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
EST: gi|149015839|gb|EE045506.2|EE045506
EST:     GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATAT                         ATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
genomic: GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATATgtgagtagta ... tgtcatgcagATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
EST: gi|31355893|gb|CD440250.1|CD440250
EST:     GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATAT                         ATGCAAANCA-GAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCG
genomic: GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATATgtgagtagta ... tgtcatgcagATGCAAA-CAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCG
EST: gi|71764026|gb|DR961963.1|DR961963
EST:     GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATAT                         ATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
genomic: GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATATgtgagtagta ... tgtcatgcagATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
EST: gi|88748923|gb|DY533064.1|DY533064
EST:     GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATAT                         ATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
genomic: GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATATgtgagtagta ... tgtcatgcagATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
EST: gi|74236391|gb|DT644305.1|DT644305
EST:     GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATAT                         ATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
genomic: GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATATgtgagtagta ... tgtcatgcagATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
EST: gi|149082842|gb|EE172068.2|EE172068
EST:     GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATAT                         ATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
genomic: GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATATgtgagtagta ... tgtcatgcagATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
EST: gi|31355559|gb|CD439916.1|CD439916
EST:     GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATAT                         ATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
genomic: GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATATgtgagtagta ... tgtcatgcagATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
EST: gi|71764027|gb|DR961964.1|DR961964
EST:     GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATAT                         ATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA
genomic: GTGCCATGTCGTGTTGATTCTCCAGAAGAGTGTGCCAAAATAATATgtgagtagta ... tgtcatgcagATGCAAACAAGAACCTACGTCTTGGTTCTGGGATTCTTATTGCAGTACCGA