1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGGTTTGGTGAAGGGGAGAAGTATGTAAAGGCTGTTTTCTCACTAGCAAGTAAAATAGCACCCAGTGTTATATTTATTGATGAGgtatgcaagcacacaagtttactttagtaaccactaccggcacagtatataccaactttttttttgactttctgcag
species | Zea mays |
transcript | GRMZM2G126453_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTTTCTCACTAGCAAGTAAAATAGCACCCAGTGTTATATTTATTGATGAG GTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGEST: gi|32920203|gb|CF025015.1|CF025015
genomic: TTTTCTCACTAGCAAGTAAAATAGCACCCAGTGTTATATTTATTGATGAGgtatgcaagc ... ctttctgcagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATG
EST: GTGTTATATTTATTGATGAG GTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGEST: gi|32934898|gb|CF039710.1|CF039710
genomic: GTGTTATATTTATTGATGAGgtatgcaagc ... ctttctgcagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATG
EST: TTTTCTCACTAGCAAGTAAAATAGCACCCAGTGTTATATTTATTGATGAG GTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGEST: gi|32920665|gb|CF025477.1|CF025477
genomic: TTTTCTCACTAGCAAGTAAAATAGCACCCAGTGTTATATTTATTGATGAGgtatgcaagc ... ctttctgcagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATG
EST: TAAAATAGCACCCAGTGTTATATTTATTGATGAG GTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATG
genomic: TAAAATAGCACCCAGTGTTATATTTATTGATGAGgtatgcaagc ... ctttctgcagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTTTGGTGAAGGGGAGAAGTATGTAAAGGCTGTTTTCTCACTAGCAAGTAAAATAGCACCCAGTGTTATATTTATTGATGAGgtatgcaagcacacaagtttactttagtaaccactaccggcacagtatataccaactttttttttgactttctgcag
- - - - - - - - - - - - - - - - - - - - - - AGCAAG