1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttctattattcccaccactgccatttgcgtaacccgtatgtcccttgacttataacaagtactggttccaactcttctcattcatgttgatcggcag
species | Zea mays |
transcript | GRMZM2G124557_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAG GACAAAGAGAACGGCGGCATTTCAGATAGGCCAGATAATGCAGTCGATATCEST: gi|166429214|gb|EG289960.1|EG289960
genomic: CAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttc ... tgatcggcagGACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATC
EST: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAG GACAAAGAGAACGGCGGCATTTCAGATAGACCEST: gi|71762606|gb|DR960543.1|DR960543
genomic: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttc ... tgatcggcagGACAAAGAGAACGGCGGCATTTCAGATAGACC
EST: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAG GACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATCEST: gi|89250321|gb|DY622107.1|DY622107
genomic: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttc ... tgatcggcagGACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATC
EST: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAG GACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATCEST: gi|88752275|gb|DY536416.1|DY536416
genomic: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttc ... tgatcggcagGACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATC
EST: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAG GGACAA-GAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATEST: gi|74240224|gb|DT648138.1|DT648138
genomic: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttc ... tgatcggcagG-ACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATAT
EST: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGCCAG GACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATCEST: gi|71767372|gb|DR965309.1|DR965309
genomic: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttc ... tgatcggcagGACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATC
EST: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAG GACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATCEST: gi|166573818|gb|EG319919.1|EG319919
genomic: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttc ... tgatcggcagGACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATC
EST: GCATTGGATTGACAAGGAAAAGCTAACGAAATTACATACTGAACTGTCAG GACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAAEST: gi|78080906|gb|DV509318.1|DV509318
genomic: GCATTGGATTGACAAGGAAAAGCTAACGAAATT-CATACTGAACTGTCAGgtaactgttc ... tgatcggcagGACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAA
EST: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAG GACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATCEST: gi|211265936|gb|FL477028.1|FL477028
genomic: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttc ... tgatcggcagGACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATC
EST: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAG GACAAAGAGAACGGCGGCATTTCAGATAGGCCAGATAATGCAGTCGATATCEST: gi|71443998|gb|DR825048.1|DR825048
genomic: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttc ... tgatcggcagGACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATC
EST: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAG GACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATC
genomic: TGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttc ... tgatcggcagGACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGCTACTCGTGGTGGGTGCTATCGAGCCTAGTCATGATTGACAGAGTGCATTGGATTGACAAGGAAAAGCTAACGAAATTCATACTGAACTGTCAGgtaactgttctattattcccaccactgccatttgcgtaacccgtatgtcccttgacttataacaagtactggttccaactcttctcattcatgttgatcggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA