1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCCCAGCGGTGTCATTCTAACCGCTGTCTCTACAAGCTGGCTTCCTTTCAACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAGgtactacctatatttacgatttcaaacatgcatcgcatcgttttggttctttgtttctgttgcaacaagcttgagattagtagtgtcttcatggatgttttaattttgcag
species | Zea mays |
transcript | GRMZM2G123140_T04 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGCTTCTTGCCGATG-ACAACAGCGTTGTCAG CTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCAEST: gi|71321764|gb|DR797569.1|DR797569
genomic: GAGCTTCTTGCCGATGAACAACAGCGTTGTCAGgtactaccta ... aattttgcagCTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCA
EST: ACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAG CTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCAEST: gi|22819056|gb|BU499146.1|BU499146
genomic: ACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAGgtactaccta ... aattttgcagCTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCA
EST: ACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAG CTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCAEST: gi|5555586|gb|AI881537.1|AI881537
genomic: ACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAGgtactaccta ... aattttgcagCTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCA
EST: ACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAG CTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCAEST: gi|71329968|gb|DR801717.1|DR801717
genomic: ACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAGgtactaccta ... aattttgcagCTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCA
EST: ACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAG CTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCAEST: gi|87157207|gb|DY401996.1|DY401996
genomic: ACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAGgtactaccta ... aattttgcagCTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCA
EST: ACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAG CTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCAEST: gi|30306491|gb|CD001164.1|CD001164
genomic: ACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAGgtactaccta ... aattttgcagCTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCA
EST: GAGCTTCTTGCCGATGAACAACAGCGTTGTCAG CTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCAEST: gi|26559801|gb|CA832036.1|CA832036
genomic: GAGCTTCTTGCCGATGAACAACAGCGTTGTCAGgtactaccta ... aattttgcagCTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCA
EST: ACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAG CTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCA
genomic: ACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAGgtactaccta ... aattttgcagCTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCAGCGGTGTCATTCTAACCGCTGTCTCTACAAGCTGGCTTCCTTTCAACCATCAGAAGGTCTTCGAGCTTCTTGCCGATGAACAACAGCGTTGTCAGgtactacctatatttacgatttcaaacatgcatcgcatcgttttggttctttgtttctgttgcaacaagcttgagattagtagtgtcttcatggatgttttaattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT