Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTTTAGATGGATCACACTGTTGTTGACGATGGAGTTCAGCTTTAACGTGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattaccaccactggaataaatttgtggacatcttacagtgctaaaccgttgcatattctaatgcag

Basic information

species Zea mays
transcript GRMZM2G122935_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122935_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os11g28990.1 (Oryza sativa), 5'ss of exon 8
TGCCTTTAGATGGATCACACTGTTGTTGACGATGGAGTTCAGCTTTAACGTGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc----------accactggaataaatttgtggacatcttac--------------agtgctaaaccgttgcatattctaatgcag
||| |||||||||||||||||  ||||||| |||||||||||||| || |||||||| || || ||||||||||||||||||||||||||||| ||  |||||  | |||           || |   | ||  ||||  | ||| ||||               | |||||  | |||||| ||||  |||||
TGCATTTAGATGGATCACACTACTGTTGACAATGGAGTTCAGCTTCAATGTGTGTATTCACATTTGGGATGCTATCTTGGGTGATCCAGAAGGTCCTCCGgtatgtaacctctggactaagcctccaaactaggtttgcagccatgttacttgtacaactgcagggggctaatgctttgcatgttcttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32856562|gb|CD996243.1|CD996243
EST:     TGTGTGTACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|44900278|gb|CK826823.1|CK826823
EST:     TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCCTCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|60339344|gb|DN206317.1|DN206317
EST:     TGTGTATACATATCTGGGATGCTATCCTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|78110295|gb|DV528710.1|DV528710
EST:     TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|74232771|gb|DT640685.1|DT640685
EST:     TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|148981603|gb|EE027761.2|EE027761
EST:     TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|76014384|gb|DT941554.1|DT941554
EST:     TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|76011673|gb|DT938843.1|DT938843
EST:     TGTGTATACATATTTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|71425450|gb|DR806680.1|DR806680
EST:     TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCTTCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|32928604|gb|CF033416.1|CF033416
EST:     TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|31628335|gb|CD526557.1|CD526557
EST:     TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|83278661|gb|DV942669.1|DV942669
EST:     TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|38687663|gb|CK144694.1|CK144694
EST:     TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|149089684|gb|EE178941.2|EE178941
EST:     TGTGTATACATATTTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|32928506|gb|CF033318.1|CF033318
EST:     TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|74241509|gb|DT649423.1|DT649423
EST:     TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: gi|32928299|gb|CF033111.1|CF033111
EST:     TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG                         GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT