1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCGTGGAGCGCATCAAGGCGGCGGTGATCTCCGGCCAGAGCAATCCCCAGCAGCAGTAGCTTCGTTGAATCCAACAGTGTTCTTATCCTTTGCATTGAAGgtatgcgagatttcatcttattgtttagtccgagtactgatgaaatctgatcatcgttgcctttttttgcag
species | Zea mays |
transcript | GRMZM2G122897_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGCAGTAGCTTCGTTGAATCCAACAGTGTTCTTATCCTTTGCATTGAAG GAGCAGCAAAATTTTAGAGCTTTCGTCAGTGGGAAGTCAAGAACGCACCTCEST: gi|101382674|gb|EB813391.1|EB813391
genomic: CAGCAGTAGCTTCGTTGAATCCAACAGTGTTCTTATCCTTTGCATTGAAGgtatgcgaga ... ttttttgcagGAGCAGCAAAATTTTAGAGCTTTCGTCAGTGGGAAGTCAAGAACGCACCTC
EST: CAGCAGTAGCTTCGTTGAATCCAACAGTGTTTTTATCCTTTGCATTGAAG GAGCAGCAAAATTTTAGAGCTTTCGTCAGTGGGAAGTCAAGAACGCACCTCEST: gi|13149667|gb|BG319989.1|BG319989
genomic: CAGCAGTAGCTTCGTTGAATCCAACAGTGTTCTTATCCTTTGCATTGAAGgtatgcgaga ... ttttttgcagGAGCAGCAAAATTTTAGAGCTTTCGTCAGTGGGAAGTCAAGAACGCACCTC
EST: CAGCAGTAGCTTCGTTGAATCCAACAGTGTTCTTATCCTTTGCATTGAAG GAGCAGCAAAATTTTAGAGCTTTCGTCAGTGGGAAGTCAAGAACGCACCTCEST: gi|94474977|gb|EB703935.1|EB703935
genomic: CAGCAGTAGCTTCGTTGAATCCAACAGTGTTCTTATCCTTTGCATTGAAGgtatgcgaga ... ttttttgcagGAGCAGCAAAATTTTAGAGCTTTCGTCAGTGGGAAGTCAAGAACGCACCTC
EST: CAGCAGTAGCTTCGTTGAATCCAACAGTGTTCTTATCCTTTGCATTGAAG GAGCAGCAAAATTTTAGAGCTTTCGTCAGTGGGAAGTCAAGAACGCACCTCEST: gi|76017778|gb|DT944948.1|DT944948
genomic: CAGCAGTAGCTTCGTTGAATCCAACAGTGTTCTTATCCTTTGCATTGAAGgtatgcgaga ... ttttttgcagGAGCAGCAAAATTTTAGAGCTTTCGTCAGTGGGAAGTCAAGAACGCACCTC
EST: CAGCAGTAGCTTCGTTGAATCCAACAGTGTTCTTATCCTTTGCATTGAAG GAGCAGCAAAATTTTAGAGCTTTCGTCAGTGGGAAGTCAAGAACGCACCTC
genomic: CAGCAGTAGCTTCGTTGAATCCAACAGTGTTCTTATCCTTTGCATTGAAGgtatgcgaga ... ttttttgcagGAGCAGCAAAATTTTAGAGCTTTCGTCAGTGGGAAGTCAAGAACGCACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGTGGAGCGCATCAAGGCGGCGGTGATCTCCGGCCAGAGCAATCCCCAGCAGCAGTAGCTTCGTTGAATCCAACAGTGTTCTTATCCTTTGCATTGAAGgtatgcgagatttcatcttattgtttagtccgagtactgatgaaatctgatcatcgttgcctttttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG