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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGCATACACATTTGATTCAGGACATGCTTTCAATTTGCCGTGAGACTTTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcatattctttattgtctggtctccttacctctagtactttccctccgttttaactgtatatttgctgcactaaatctggtatattacaagttaa...

Basic information

species Zea mays
transcript GRMZM2G120578_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120578_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g15550.2 (Oryza sativa), 5'ss of exon 9
GGTTGCATACACATTTGATTCAGGACATGCTTTCAATTTGCCGTGAGACTTTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcatat-tctttattgtctggt-ctccttacctctagtactttccctccgttttaactgtatatttgctgcactaaatctggtatattacaagttaa
|||||||||| ||| | || |||||||||||||| || ||||||||||| |||||||||||||||| |||||| ||| | |||||||| ||||| || |||||||||||   | |  ||| |||  | ||    |  |   |||      |   ||||||    || |  | ||    ||  |      |  |     ||  
GGTTGCATACGCATCTTATCCAGGACATGCTTTCGATCTGCCGTGAGACATTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGgttcttcattcgtttccattttctccttctgtccattttctgtatgcaagccaggttttatgattagaaattctttgatatgttaacattgcttttcttt--

upper sequence: GRMZM2G120578_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 9
GGTTGCATACACATTTGATTCAGGACATGCTTTCAATTTGCCGTGAGACTTTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttctt-catattctttattgtctg-gtctccttacct--ctagtactttccctccgttttaactgtatatttgctgcactaaatctggtatattacaagttaa
|| | || |||||| | |||||||| |||||||| ||||| ||||| || ||||||||||| ||||  ||||||||||| ||||| || ||||| || ||||  |    ||||  |   | | |  | ||  || |    ||  |  |||| ||  | | ||  ||    ||| | | | | |    |||   ||  ||| |  
GGCTCCACACACATCTTATTCAGGATATGCTTTCTATTTGTCGTGAAACATTCAAGGGTTCGGTCCATTATGCATGGGCAAGTGTTCCTACATATCCAAGgtaatcatgtattgatctctatatatggctaattgctctactgattttttctctttggtcta-ttgccc-tttccagaaatgataagggtgatttggaagat--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148928250|gb|EE284812.2|EE284812
EST:     TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
genomic: TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
EST: gi|37380776|gb|CF627223.1|CF627223
EST:     GCTATGCATGGGCTAGTGT-CCTACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
genomic: GCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
EST: gi|32919151|gb|CF023963.1|CF023963
EST:     TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCGACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCA
genomic: TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCA
EST: gi|6448423|gb|AW181189.1|AW181189
EST:     TTCAAGGGTTCTGTCCCCTATGCATGGGCTAGTGTCCCAACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCNCCGGTCAACTT
genomic: TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
EST: gi|32866078|gb|CF005760.1|CF005760
EST:     TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
genomic: TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
EST: gi|211227788|gb|FL398706.1|FL398706
EST:     TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
genomic: TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
EST: gi|78117804|gb|DV536191.1|DV536191
EST:     TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
genomic: TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
EST: gi|4804277|gb|AI666143.1|AI666143
EST:     TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
genomic: TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
EST: gi|78024870|gb|DV493257.1|DV493257
EST:     TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
genomic: TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
EST: gi|12968943|gb|BG265784.1|BG265784
EST:     TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
genomic: TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
EST: gi|110496613|gb|EE015080.1|EE015080
EST:     TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
genomic: TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
EST: gi|89247054|gb|DY618840.1|DY618840
EST:     TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
genomic: TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
EST: gi|37382012|gb|CF627919.1|CF627919
EST:     TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
genomic: TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
EST: gi|211042510|gb|FL401130.1|FL401130
EST:     TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAG                         TGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT
genomic: TTCAAGGGTTCTGTCCGCTATGCATGGGCTAGTGTCCCAACATACCCGAGgttcttcata ... aattttgcagTGGGGTGATTGGGTTTCTGTTATGCGCCAAGGATGGCCCACCGGTCAACTT