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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATTCACTAGATGCTGAATTTACGAGACCATTGTGGGTTTTTGGCATCAGCTCGTATGATTTTCTTGGAAACAGCGACCACATTGTTTTCAGTTATAGgtatcgataatattgaagaaaaaaaatctatgttgcttttgtttgtgagacatcttcaattcttcatggaccatcatgataactatgccttgcag

Basic information

species Zea mays
transcript GRMZM2G120302_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120302_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os06g11180.1 (Oryza sativa), 5'ss of exon 8
TGTATTCACTAGATGCTGAATTTACGAGACCATTGTGGGTTTTTGGCATCAGCTCGTATGATTTTCTTGGAAACAGCGACCACATTGTTTTCAGTTATAGgtatcgataatattgaagaaaaaaaatctatgttgcttttgtttgtgagacatcttcaattcttcatggaccatcatgataactatgccttgcag--
| ||  | ||||||||||| || || || ||||||||||||||||| |||||||| |||| |||||||||  | ||| | |||||||||||||| || |||| |  ||  || ||             |||  | || ||| |    | | ||    |||||         |||||  ||| ||||   |  ||   
TTTACACGCTAGATGCTGAGTTCACAAGGCCATTGTGGGTTTTTGGTATCAGCTCTTATGGTTTTCTTGGTGAAAGCAATCACATTGTTTTCAGCTACAGgtttttattgtactg------------ttatacttctgttgatgaaaatatattaaaaattc---------catcacaatacctatatgtcacacag

upper sequence: GRMZM2G120302_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv18s0001g11150.t01 (Vitis vinifera), 5'ss of exon 8
TGTATTCACTAGATGCTGAATTTACGAGACCATTGTGGGTTTTTGGCATCAGCTCGTATGATTTTCTTGGAAACAGCGACCACA---------TTGTTTTCAGTTATAGgtatcgataatattgaagaaaaaaaatctatgttgcttttgtttgtgagacatct-----tcaattcttcatggaccatcatgat--aactatgccttgcag------------------------------
         | |||||||||||| | |||||| | |||||||||||||| ||||| ||||| ||||||   |   | |  || |         ||||||  || || |||| ||  ||| |  |  ||  ||       | |  |||||| || | || | | |     |   ||  |  |   | ||  ||||  | ||||  |||  |                               
---------TGGATGCTGAATTTTCAAGACCACTATGGGTTTTTGGCATTAGCTCTTATGAATTTCTTCAGAGTGGTGGACAGAAAGAGTTAATTGTTTGTAGCTACAGgtctctctaagaaagctgatgaatttgtcttctctcttttgcttattagccttttattgtttgcttaatttttttcaattttgattcatctatttctttaatgtaatggaagttgtggatgattacgtgcag