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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGAACCATGAAGGATGGACCTGAAGTTTCTGTGATATCGTTGTGCGCCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtacatgacaccaagggattcaaacacttgtttttttttcttcccctggatactaaacggggtgatgttttcag

Basic information

species Zea mays
transcript GRMZM2G119759_T04
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119759_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g58700.2 (Oryza sativa), 5'ss of exon 9
CAAAGGAACCATGAAGGATGGACCTGAAGTTTCTGTGATATCGTTGTGCGCCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca-tgacaccaagggattcaaacacttgtttttttttc--ttcccctggatactaaacg-gggtgatgttttcag----------------------------------------------
||||||||||||||||||||||||||| |||||||| ||||| || || ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||  |   |   | |    |   |   |||| |   || |    |  |     ||| |   ||     ||| ||       |                                              
CAAAGGAACCATGAAGGATGGACCTGAGGTTTCTGTCATATCATTATGTGCCTTTGAAGGTCATTGGACTAGCCAACATGAACTATTTTACCAAAACAAGgtaaagcttagcaaaattctgctgtgagaacagtatgttgtcccacaatattaatgggtgtaaattttaggttattgacctggcaaggttgaatcatgagaacatagcaaaatttctgggctattgcag

upper sequence: GRMZM2G119759_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g58700.1 (Oryza sativa), 5'ss of exon 9
CAAAGGAACCATGAAGGATGGACCTGAAGTTTCTGTGATATCGTTGTGCGCCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtacatgacaccaagggattcaaacacttgtttttttttcttcccctggatactaaacggggtgatgttttcag
||||||||||||||||||||||||||| |||||||| ||||| || || ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||  |  | |  ||       ||||        |     | |  |  |||   ||| |||  || || |   ||| ||
CAAAGGAACCATGAAGGATGGACCTGAGGTTTCTGTCATATCATTATGTGCCTTTGAAGGTCATTGGACTAGCCAACATGAACTATTTTACCAAAACAAGgtaaag--cttagca-----aaattctgctgtgagaacagtatgttgtcccacaatattaatgggtgtaaa--ttttag