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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGAACCATGAAGGATGGACCTGAAGTTTCTGTGATATCGTTGTGCGCCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtacatgacaccaagggattcaaacacttgtttttttttcttcccctggatactaaacggggtgatgttttcag

Basic information

species Zea mays
transcript GRMZM2G119759_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119759_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g58700.2 (Oryza sativa), 5'ss of exon 9
CAAAGGAACCATGAAGGATGGACCTGAAGTTTCTGTGATATCGTTGTGCGCCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca-tgacaccaagggattcaaacacttgtttttttttc--ttcccctggatactaaacg-gggtgatgttttcag----------------------------------------------
||||||||||||||||||||||||||| |||||||| ||||| || || ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||  |   |   | |    |   |   |||| |   || |    |  |     ||| |   ||     ||| ||       |                                              
CAAAGGAACCATGAAGGATGGACCTGAGGTTTCTGTCATATCATTATGTGCCTTTGAAGGTCATTGGACTAGCCAACATGAACTATTTTACCAAAACAAGgtaaagcttagcaaaattctgctgtgagaacagtatgttgtcccacaatattaatgggtgtaaattttaggttattgacctggcaaggttgaatcatgagaacatagcaaaatttctgggctattgcag

upper sequence: GRMZM2G119759_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g58700.1 (Oryza sativa), 5'ss of exon 9
CAAAGGAACCATGAAGGATGGACCTGAAGTTTCTGTGATATCGTTGTGCGCCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtacatgacaccaagggattcaaacacttgtttttttttcttcccctggatactaaacggggtgatgttttcag
||||||||||||||||||||||||||| |||||||| ||||| || || ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||  |  | |  ||       ||||        |     | |  |  |||   ||| |||  || || |   ||| ||
CAAAGGAACCATGAAGGATGGACCTGAGGTTTCTGTCATATCATTATGTGCCTTTGAAGGTCATTGGACTAGCCAACATGAACTATTTTACCAAAACAAGgtaaag--cttagca-----aaattctgctgtgagaacagtatgttgtcccacaatattaatgggtgtaaa--ttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149107663|gb|EE189542.2|EE189542
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|91050218|gb|EB160636.1|EB160636
EST:     TTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: TTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|71313398|gb|DR793250.1|DR793250
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|149051626|gb|EE155736.2|EE155736
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|78089519|gb|DV517893.1|DV517893
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|148950050|gb|EC895582.2|EC895582
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|50334832|gb|CO529958.1|CO529958
EST:     CACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|71761155|gb|DR959092.1|DR959092
EST:     CTTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|71330749|gb|DR802161.1|DR802161
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|149106783|gb|EE188679.2|EE188679
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|101388114|gb|EB816071.1|EB816071
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|149013195|gb|EE042830.2|EE042830
EST:     TTCGAAGGTCATTGGGACTAGCCACCATGAACTCTTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: TTCGAAGGTCATT-GGACTAGCCACCATGAACTC-TTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|149097302|gb|EE183131.2|EE183131
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|78122547|gb|DV540931.1|DV540931
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|148943639|gb|EC888703.2|EC888703
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|78084470|gb|DV512863.1|DV512863
EST:     GGTCATTGGACTAGCCACCATGAACTC-TTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: GGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|149004762|gb|EE039259.2|EE039259
EST:     GGTCATTGGACTAGACACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: GGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|149095721|gb|EE181354.2|EE181354
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|76910133|gb|DV163719.1|DV163719
EST:     ATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: ATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|148975399|gb|EE025699.2|EE025699
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|149031687|gb|EE154870.2|EE154870
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|149074933|gb|EE163389.2|EE163389
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|94474040|gb|EB702998.1|EB702998
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|149089831|gb|EE179109.2|EE179109
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|149111973|gb|EE191133.2|EE191133
EST:     AGGTCATTGGACTAGCCACCATG-ACTTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: AGGTCATTGGACTAGCCACCATGAAC-TCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|148999085|gb|EE024226.2|EE024226
EST:     CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
EST: gi|91875214|gb|EB405171.1|EB405171
EST:     CCTTGGAGGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAG                         GTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG
genomic: CCTTCGAAGGTCATTGGACTAGCCACCATGAACTCTTTTACCAAAACAAGgtatggtaca ... atgttttcagGTCATTGATCTGGCAAGATTGAATCATGAGAACATAGCAAAGTTCTTAGGG