Sequence
atgc intronic sequence ATGC exonic sequenceGGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTACATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAGAAgtaagcactacatatttccattcttgttttctttctgttcagcaggtgttcattttgattaaaatgtccttcctatttttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G119725_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g19510.1 (Oryza sativa), 5'ss of exon 8
GGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTACATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAGAAgtaagcactacatatttccattcttgttttctttctgttcagcaggtgttcattttgattaaaatgtccttcctatt--tttacag
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GGTATGCAAAGCGGTTTTTGCATCCTGATGTTGTTGCCCGATATGACTACATATTCATCTGGGATGAGGACCTAGGTGTTGAGCATTTCAATGCAGAGAAgtaagaactgcatttttgt-------tcctttatctgttgaccttgtgttccacttgggtgcgattatgtttgtactctttttcag
upper sequence: GRMZM2G119725_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv06s0004g02700.t01 (Vitis vinifera), 5'ss of exon 8
GGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTACATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAGAAgtaagcacta----catatttccattcttgttttctttctgttcagcaggtgttcattttgattaaaatgtccttcctat--ttttacag
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GGTATGCAAAAAGGTTCTTGCATCCTGATGTTGTTGCTGCTTATGAATATATTTTTATATGGGATGAAGACCTAGATGTAAAGCACTTCAATGGAGAGAAgtaagtttttttcccataaaccagtgatagttcctggtcaaattgaaaatttttacacttctttgtgttctgcttccgatgatcttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211445045|gb|FL132441.1|FL132441EST: ATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAGAA GTACATTGAGCTTGTTAGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTT
genomic: ATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAGAAgtaagcacta ... atttttacagGTACATTGAGCTTGTTAGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTACATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAGAAgtaagcactacatatttccattcttgttttctttctgttcagcaggtgttcattttgattaaaatgtccttcctatttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA