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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGATTTGGTGCGACAAGGTGGGTTGGCACGCTGGACCGACAGTGCGAGCGTCTCGCCAGTGCCATGGCCAGCAACATCCCCAACGGCGACCTCGGTGgtaagtaaagtaccccactacttgcaaccaatggataagtaagggctagtagtatatgtagaagtgtagaactatatatagatcaatgtgaaattgcccgcag

Basic information

species Zea mays
transcript GRMZM2G118063_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118063_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os08g08820.2 (Oryza sativa), 5'ss of exon 8
CTGGGATTTGGTGCGACAAGGTGGGTTGGCACGCTGGACCGACAGTGCGAGCGTCTCGCCAGTGCCATGGCCAGCAACATCCCCAACGGCGACCTCGGTGgtaagtaaagtaccccactacttgcaaccaatggataagtaagggctagtagtatatgta-gaagtgtag--aactatatatagatcaatgtgaaattgcccgcag------------------------------------------------------
|| | ||| || |||| | ||||||| |||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||| || ||||    | | | |   | |      | | |    || ||     ||| | | |  | || |||||  ||  || | |    |    ||||  | ||| |   ||                                                       
CTCGCATTCGGCGCGAAACGGTGGGTCGGCACGCTGGACCGGCAATGCGAGCGCCTCGCCAGCGCCATGGCCAGCAACATCCCCAATGGCGACCTTGGAGgtacaagacgaatcaatcaatcaattaaccactcctacgtccta-ctaattgcaattataagaagtacagataattgtgaccaatgaaatgccacattacaatcatgattactgatgattagtataatttgtgtatgaaatgttatgtgttgtggtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558595|gb|CA830830.1|CA830830
EST:     GCGTCTCGCCAGTGCCATGGCCAGCAACATCCCCAACGGCGACCTCGGTG                         TGATCACGAGCATAGAGGGGAGGAAGAGCATGCTGAAGCTGGCAGAGAGGA
genomic: GCGTCTCGCCAGTGCCATGGCCAGCAACATCCCCAACGGCGACCTCGGTGgtaagtaaag ... ttgcccgcagTGATCACGAGCATAGAGGGGAGGAAGAGCATGCTGAAGCTGGCAGAGAGGA
EST: gi|87156118|gb|DY400907.1|DY400907
EST:     GCGTCTCGCCAGTGCCATGGCCAGCAACATCCCCAACGGCGACCTCGGTG                         TGATCACGAGCATAGAGGGGAGGAAGAGCATGCTGAAGCTGGCAGAGAGGA
genomic: GCGTCTCGCCAGTGCCATGGCCAGCAACATCCCCAACGGCGACCTCGGTGgtaagtaaag ... ttgcccgcagTGATCACGAGCATAGAGGGGAGGAAGAGCATGCTGAAGCTGGCAGAGAGGA
EST: gi|22472184|gb|BU036664.1|BU036664
EST:     GCGTCTCGCCAGTGCCATGGCCAGCAACATCCCCAACGGCGACCTCGGTG                         TGATCACGAGCATAGAGGGGAGGAAGAGCATGCTGAAGCTGGCAGAGAGGA
genomic: GCGTCTCGCCAGTGCCATGGCCAGCAACATCCCCAACGGCGACCTCGGTGgtaagtaaag ... ttgcccgcagTGATCACGAGCATAGAGGGGAGGAAGAGCATGCTGAAGCTGGCAGAGAGGA
EST: gi|76017721|gb|DT944891.1|DT944891
EST:     GCGTCTCGCCAGTGCCATGGCCAGCAACATCCCCAACGGCGACCTCGGTG                         TGATCACGAGCATAGAGGGGAGGAAGAGCATGCTGAAGCTGGCAGAGAGGA
genomic: GCGTCTCGCCAGTGCCATGGCCAGCAACATCCCCAACGGCGACCTCGGTGgtaagtaaag ... ttgcccgcagTGATCACGAGCATAGAGGGGAGGAAGAGCATGCTGAAGCTGGCAGAGAGGA
EST: gi|5566756|gb|AI881622.1|AI881622
EST:     GCGTCTCGCCAGTGCCATGGCCAGCAACATCCCCAACGGCGACCTCGGTG                         TGATCACGAGCATAGAGGGGAGGAAGAGCATGCTGAAGCTGGCAGAGAGGA
genomic: GCGTCTCGCCAGTGCCATGGCCAGCAACATCCCCAACGGCGACCTCGGTGgtaagtaaag ... ttgcccgcagTGATCACGAGCATAGAGGGGAGGAAGAGCATGCTGAAGCTGGCAGAGAGGA