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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGTATCAACGAGTACACATCCAGCTACATGAAGGGGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaatttcttgtgctttaaactcgatatttcgaataaatatgtatttgccttggatatatatttttttcaccaaacctaaacatccgtcccataaattctgtag

Basic information

species Zea mays
transcript GRMZM2G118003_T03
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211416177|gb|FL300104.1|FL300104
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|4388066|gb|AI491238.1|AI491238
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|60350347|gb|DN217320.1|DN217320
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|31359746|gb|CD444103.1|CD444103
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAG-TT------G---                         ---CACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|4776298|gb|AI665301.1|AI665301
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|67017631|gb|CO446380.1|CO446380
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|67021285|gb|CO450034.1|CO450034
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCCATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|32916227|gb|CF021039.1|CF021039
EST:     CCAGCTGGGGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|24768905|gb|CA404034.1|CA404034
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|60356597|gb|DN223570.1|DN223570
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|60352240|gb|DN219213.1|DN219213
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|22472957|gb|BU037437.1|BU037437
EST:     AGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: AGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|67022090|gb|CO450839.1|CO450839
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGCCAGGTTCAATATGTTT                         TTGCACGCAATGGCANACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|30032219|gb|CB834070.1|CB834070
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|31664105|gb|CD573285.1|CD573285
EST:     TGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAGCCGATTGGGCCACAG
genomic: TGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|148928823|gb|EC873677.2|EC873677
EST:     CCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|67016031|gb|CO444780.1|CO444780
EST:     CTAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|67030931|gb|CO459680.1|CO459680
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|51592877|gb|CV072023.1|CV072023
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|67016059|gb|CO444808.1|CO444808
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|60357435|gb|DN224408.1|DN224408
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|31910375|gb|CD651392.1|CD651392
EST:     CCAGCTGGCGCCCAGTAGCTATTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|60339007|gb|DN205980.1|DN205980
EST:     GGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: GGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|4874492|gb|AI674012.1|AI674012
EST:     CCAGCTGGCGCCCAGTAGCTATTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|60397408|gb|DN230224.1|DN230224
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|211416186|gb|FL300113.1|FL300113
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|67010847|gb|CO439596.1|CO439596
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|32940194|gb|CF045013.1|CF045013
EST:     CCAGCTGGCGCTCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAT
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|5069778|gb|AI737743.1|AI737743
EST:     CCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|32857649|gb|CD997330.1|CD997330
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|60338477|gb|DN205450.1|DN205450
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|211416176|gb|FL300103.1|FL300103
EST:     CAGCTGGNCGCCCAGTAGCTACTCTGCCGATTGGCAG-TTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CAGCTGG-CGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|71331058|gb|DR802359.1|DR802359
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|28982563|gb|BQ538179.2|BQ538179
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|67021301|gb|CO450050.1|CO450050
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCANACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|40334112|gb|CK368182.1|CK368182
EST:     GGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: GGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|29543409|gb|CB603805.1|CB603805
EST:     CGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|148934073|gb|EC878087.2|EC878087
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|211416180|gb|FL300107.1|FL300107
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGGTCAATATGTTT                         TTGCACGCAATGG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGG
EST: gi|67019109|gb|CO447858.1|CO447858
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|211416182|gb|FL300109.1|FL300109
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|211416178|gb|FL300105.1|FL300105
EST:     CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: CCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: gi|44900753|gb|CK827298.1|CK827298
EST:     GGTTCAATATGTTT                         TTGCACGCAATGGCAAACCGATTGGACCACAG
genomic: GGTTCAATATGTTTgtgagtttaa ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCGGTATCAACGAGTACACATCCAGCTACATGAAGGGGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGTTTgtgagtttaatttcttgtgctttaaactcgatatttcgaataaatatgtatttgccttggatatatatttttttcaccaaacctaaacatccgtcccataaattctgtag

- - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG