1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTCGGCAGACTACATCGGTATCAACGAGTACACATCCAGCTACATGAAGGGGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGgttcaatatgtttgtgagtttaatttcttgtgctttaaactcgatatttcgaataaatatgtatttgccttggatatatatttttttcaccaaacctaaacatccgtcccataaattctgtag
species | Zea mays |
transcript | GRMZM2G118003_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|4388066|gb|AI491238.1|AI491238
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|4388066|gb|AI491238.1|AI491238
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|4388066|gb|AI491238.1|AI491238
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|28982563|gb|BQ538179.2|BQ538179
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|28982563|gb|BQ538179.2|BQ538179
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|28982563|gb|BQ538179.2|BQ538179
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|28982563|gb|BQ538179.2|BQ538179
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|24767182|gb|CA402326.1|CA402326
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAG TTGCACGCAATGGCAAACCGATTGGACCACAGEST: gi|148934073|gb|EC878087.2|EC878087
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGgttcaatatg ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|148934073|gb|EC878087.2|EC878087
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|148934073|gb|EC878087.2|EC878087
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|148934073|gb|EC878087.2|EC878087
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|60352240|gb|DN219213.1|DN219213
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|60352240|gb|DN219213.1|DN219213
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|60352240|gb|DN219213.1|DN219213
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|60352240|gb|DN219213.1|DN219213
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|60350347|gb|DN217320.1|DN217320
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAG GEST: gi|60350347|gb|DN217320.1|DN217320
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGgttcaatatg ... aattctgtag-
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAG GEST: gi|31359746|gb|CD444103.1|CD444103
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGgttcaatatg ... aattctgtag-
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAG TTGCACGCAATGGCAAACCGATTGGACCACAGEST: gi|60338477|gb|DN205450.1|DN205450
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGgttcaatatg ... aattctgtagTTGCACGCAATGGCAAACCGATTGGACCACAG
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|60338477|gb|DN205450.1|DN205450
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|60338477|gb|DN205450.1|DN205450
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGEST: gi|60338477|gb|DN205450.1|DN205450
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
EST: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATG
genomic: GGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATT----GG--C---A-Ggttcaatatg ... a
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGGCAGACTACATCGGTATCAACGAGTACACATCCAGCTACATGAAGGGGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGgttcaatatgtttgtgagtttaatttcttgtgctttaaactcgatatttcgaataaatatgtatttgccttggatatatatttttttcaccaaacctaaacatccgtcccataaattctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG