1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GAAGGAGAAAATAAAATACCTTGAGGAGCGTTTAGCACAGGCAGAGTCTCAAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTGgtatatatatatatatgctaatatattaatttgttatttatttgtatgattttcttttctgaaagagttatttaattattggttgaagtattgtatgacttgctctctagttaacaatcggcctcatttgcag
species | Zea mays |
transcript | GRMZM2G114861_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTG GAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGAEST: gi|67019346|gb|CO448095.1|CO448095
genomic: AAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTGgtatatatat ... tcatttgcagGAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGA
EST: AATTGTTGAAGGCGACGAGTTANCGGAAAAAACTGCACAACACTATATTG GAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGAEST: gi|87155658|gb|DY400447.1|DY400447
genomic: AATTGTTGAAGGCGACGAGTTA-CGGAAAAAACTGCACAACACTATATTGgtatatatat ... tcatttgcagGAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGA
EST: AAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTG GAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGAEST: gi|67014413|gb|CO443162.1|CO443162
genomic: AAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTGgtatatatat ... tcatttgcagGAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGA
EST: AATTGCTGAAGGCGACGAGTTANCGGAAAAAACTGCACAACACTATATTG GAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGAEST: gi|32942682|gb|CF047501.1|CF047501
genomic: AATTGTTGAAGGCGACGAGTTA-CGGAAAAAACTGCACAACACTATATTGgtatatatat ... tcatttgcagGAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGA
EST: AAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTG GAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGAEST: gi|32942760|gb|CF047579.1|CF047579
genomic: AAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTGgtatatatat ... tcatttgcagGAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGA
EST: AAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTG GAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGAEST: gi|32928735|gb|CF033547.1|CF033547
genomic: AAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTGgtatatatat ... tcatttgcagGAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGA
EST: AAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTG GAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGAEST: gi|26559172|gb|CA831407.1|CA831407
genomic: AAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTGgtatatatat ... tcatttgcagGAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGA
EST: AAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTG GAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGA
genomic: AAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTGgtatatatat ... tcatttgcagGAACTGAAAGGAAACATTAGGGTTTTTTGTAGAGTTCGACCACTTCTTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGAGAAAATAAAATACCTTGAGGAGCGTTTAGCACAGGCAGAGTCTCAAATTGTTGAAGGCGACGAGTTACGGAAAAAACTGCACAACACTATATTGgtatatatatatatatgctaatatattaatttgttatttatttgtatgattttcttttctgaaagagttatttaattattggttgaagtattgtatgacttgctctctagttaacaatcggcctcatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG