1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCAGGAAATGAGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttcagaagcttgtagacgacggccttttgttctcttcgaccagccagcaaaacaacattttatttagaaaaaaaaacgaactactgaacaacactgcccttgcatttgtggcttcag
species | Zea mays |
transcript | GRMZM2G114337_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAAT ATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGGEST: gi|211112077|gb|FL283002.1|FL283002
genomic: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
EST: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAAT ATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGGEST: gi|22818980|gb|BU499070.1|BU499070
genomic: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
EST: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAAT ATGGCTGACCCGACTGGAATTGCAAAACTGGTCAGTGACGCACGTAGATTGEST: gi|71762012|gb|DR959949.1|DR959949
genomic: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAA-CTGGTCAGTGACGCACGTAGATTG
EST: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAAT ATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGGEST: gi|71773585|gb|DR971483.1|DR971483
genomic: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
EST: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAAT ATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGGEST: gi|20802912|gb|BQ293962.1|BQ293962
genomic: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
EST: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAAT ATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGGEST: gi|211093538|gb|FL437518.1|FL437518
genomic: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
EST: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAAT ATGGCTGACCCAACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGGEST: gi|76284047|gb|DV023615.1|DV023615
genomic: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
EST: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCCCTTCAAT ATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGGEST: gi|60358070|gb|DN225043.1|DN225043
genomic: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
EST: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAAT ATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGGEST: gi|30306660|gb|CD001333.1|CD001333
genomic: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
EST: TACTTGCCAACTCTCTTCAAT ATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGGEST: gi|20506952|gb|BQ279416.1|BQ279416
genomic: TACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
EST: GTGGCATAACTGTTTATTCAGATGATCACTACTTGCCAACTCTCTTCAAT ATGGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGEST: gi|101389977|gb|EB816920.1|EB816920
genomic: GTGGCATAACTG-CTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagAT-GGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTG
EST: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAAT ATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGGEST: gi|26456599|gb|CA828182.1|CA828182
genomic: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
EST: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAAT ATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGGEST: gi|211112078|gb|FL283003.1|FL283003
genomic: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
EST: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAAT ATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACCCACGTAGATTGGEST: gi|20336928|gb|BQ172558.1|BQ172558
genomic: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
EST: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAAT ATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
genomic: AGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttc ... gtggcttcagATGGCTGACCCGACTGGAATTGCAAACTGGTCAGTGACGCACGTAGATTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGGAAATGAGTGGCATAACTGCTATTCAGATGAGCACTACTTGCCAACTCTCTTCAATgtaagtgttcagaagcttgtagacgacggccttttgttctcttcgaccagccagcaaaacaacattttatttagaaaaaaaaacgaactactgaacaacactgcccttgcatttgtggcttcag
- - - - - - - - - - - - - - CAGATG