1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAgtaagttctttcacagaacaagtccgaatatataactcgcgagatatcctggcaatgccaaatcttcgtttatttttctttcctcgtgcatttcactttttttttttttactttgattgttcacatttgtattcattttcggaactgtcag
species | Zea mays |
transcript | GRMZM2G113640_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CACAAGACTTCCACTAGAGAA CATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTEST: gi|32928356|gb|CF033168.1|CF033168
genomic: CACAAGACTTCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTT
EST: GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAA CATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTEST: gi|211270654|gb|FL248444.1|FL248444
genomic: GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTT
EST: TATGGCCTTGMAGGTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAEST: gi|71438832|gb|DR819882.1|DR819882
genomic: agGTTGCTTCTCATCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAA
EST: TATGGCCTTGCAGGTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAEST: gi|213171204|gb|FM188301.1|FM188301
genomic: agGTTGCTTCTCATCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAA
EST: GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAA CATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTEST: gi|211470300|gb|FL449608.1|FL449608
genomic: GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTT
EST: CTCTACACCAAG-CTTCCACTAGAGAA CATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTEST: gi|76012002|gb|DT939172.1|DT939172
genomic: CTCTACA-CAAGACTTCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTT
EST: TATGGCCTTGCAGGTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAEST: gi|6227108|gb|AW155812.1|AW155812
genomic: agGTTGCTTCTCATCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAA
EST: GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAEST: gi|50327796|gb|CO522922.1|CO522922
genomic: TATTCTCTACACAAGACTTCCACTAGAGAAgtaagttctt ... gaactgtcagC
EST: TATGGCCTTGCAGGTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAA
genomic: agGTTGCTTCTCATCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAgtaagttctttcacagaacaagtccgaatatataactcgcgagatatcctggcaatgccaaatcttcgtttatttttctttcctcgtgcatttcactttttttttttttactttgattgttcacatttgtattcattttcggaactgtcag
- - - - CAAGCT
- - - - - AAGCTG