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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaacattgatctttattgaataaatgctagtttttatgttagtacgcaccaattctaaaccagaaatgcatttcatacag

Basic information

species Zea mays
transcript GRMZM2G112149_T03
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32928418|gb|CF033230.1|CF033230
EST:     CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
EST: gi|32928320|gb|CF033132.1|CF033132
EST:     CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
EST: gi|211329360|gb|FL127513.1|FL127513
EST:     CCTCAAGGAGATCATCGCCCAGGGTGANAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGT
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGT
EST: gi|32909873|gb|CF014685.1|CF014685
EST:     GGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGTTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: GGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
EST: gi|32830685|gb|CD970363.1|CD970363
EST:     CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
EST: gi|33102730|gb|CF062690.1|CF062690
EST:     CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
EST: gi|211327197|gb|FL127506.1|FL127506
EST:     GATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: GATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
EST: gi|32846614|gb|CD986295.1|CD986295
EST:     CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
EST: gi|21885252|gb|BQ740245.1|BQ740245
EST:     CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
EST: gi|211333690|gb|FL127548.1|FL127548
EST:     GATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: GATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
EST: gi|33101594|gb|CF061554.1|CF061554
EST:     CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
EST: gi|32804284|gb|CD956520.1|CD956520
EST:     CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGAGGATC
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATC
EST: gi|32850033|gb|CD989714.1|CD989714
EST:     CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
EST: gi|32831682|gb|CD971360.1|CD971360
EST:     CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
EST: gi|32827212|gb|CD966890.1|CD966890
EST:     CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATC
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATC
EST: gi|32831227|gb|CD970905.1|CD970905
EST:     CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
EST: gi|32850228|gb|CD989909.1|CD989909
EST:     CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCT                         GCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT
genomic: CCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaaca ... tttcatacagGCAGCTGCTTTGAGGGGATCTGACCACCGCCGTTCTACCACTGTTTCTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTACTTTGCAGCCAATGCTGCTGCTCAGGCCTCAAGGAGATCATCGCCCAGGGTGACAAACGAGGAGGTCCAGAAGGCTgtaagtaacattgatctttattgaataaatgctagtttttatgttagtacgcaccaattctaaaccagaaatgcatttcatacag

- - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG