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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTCTGACAGGTAAGTACACTCCAGAAAACCCCCCTACTGGTCCTCGAGCAAACACATACACCCCTGAGTTCCTCGCCAAGgttagtgtactgtaaactggagctcgctggttacactgacagtctgacacacagcttcagtctctgcaattcaacttcgttatctgaaatctgaag

Basic information

species Zea mays
transcript GRMZM2G111954_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G111954_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g04990.1 (Oryza sativa), 5'ss of exon 8
GTGTTCTGACAGGTAAGTACACTCCAGAAAACCCCCCTACTGGTCCTCGAGCAAACACATACACCCCTGAGTTCCTCGCCAAGgtta-----gtg-----tactgtaaactggagctcgctggttacactga----cagtctg-acacacagcttcagtctctgcaattcaac---ttcgttatctgaaatctgaag-------------------
|||||||| |||| || |||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||| |||||||||     ||      ||||| |  ||  |||| ||| ||||||   |    |||  || |  | |   || ||||||||||| | |||   ||  |||||| ||| ||  |                    
GTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAGCAAACACATATACCCCTGAGTTCCTCACCAAGgttatattagtacatattactgaacccttaagctagctagttacatacagcttcagcttggatgcgccattt-agtctctgcaactgaacatttttcttatctaaaacctataaacatgtttcatgtgcacag