Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTCTGACAGGTAAGTACACTCCAGAAAACCCCCCTACTGGTCCTCGAGCAAACACATACACCCCTGAGTTCCTCGCCAAGgttagtgtactgtaaactggagctcgctggttacactgacagtctgacacacagcttcagtctctgcaattcaacttcgttatctgaaatctgaagatgcgccatgtcatgtatgtacag

Basic information

species Zea mays
transcript GRMZM2G111954_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G111954_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g04990.1 (Oryza sativa), 5'ss of exon 8
GTGTTCTGACAGGTAAGTACACTCCAGAAAACCCCCCTACTGGTCCTCGAGCAAACACATACACCCCTGAGTTCCTCGCCAAGgtta-----gtg-----tactgtaaactggagctcgctggttacactga----cagtctg-acacacagcttcagtctctgcaattcaac---ttcgttatctgaaatctgaagatgcgccatgtcatgtatgtacag
|||||||| |||| || |||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||| |||||||||     ||      ||||| |  ||  |||| ||| ||||||   |    |||  || |  | |   || ||||||||||| | |||   ||  |||||| ||| ||  | |     |||||    | || ||||
GTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAGCAAACACATATACCCCTGAGTTCCTCACCAAGgttatattagtacatattactgaacccttaagctagctagttacatacagcttcagcttggatgcgccattt-agtctctgcaactgaacatttttcttatctaaaacctataaa-----catgtttcatgtgcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18170355|gb|BM340195.1|BM340195
EST:     CCCCTACTGGTCCTCGAGCAGACACATACACCCCTGAGTTCCTCGCCAAG                         CTCCAACCACTTATGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAG
genomic: CCCCTACTGGTCCTCGAGCAAACACATACACCCCTGAGTTCCTCGCCAAGgttagtgtac ... gtatgtacagCTCCAACCACTTATGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAG
EST: gi|148936270|gb|EC880348.2|EC880348
EST:     CCCCTACTGGTCCTCGAGCAAACACATACACCCCTGAGTTCCTCGCCAAG                         CTCCAACCACTTATGAACAGGATTAAAGAGATCGGAGCAAGTTATGGCAAG
genomic: CCCCTACTGGTCCTCGAGCAAACACATACACCCCTGAGTTCCTCGCCAAGgttagtgtac ... gtatgtacagCTCCAACCACTTATGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAG
EST: gi|67034494|gb|CO463044.1|CO463044
EST:     CCCCTACTGGTCCTCGAGCAAACACATACACCCCTGAGTTCCTCACCAAG                         CTCCAACCACTTATGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAG
genomic: CCCCTACTGGTCCTCGAGCAAACACATACACCCCTGAGTTCCTCGCCAAGgttagtgtac ... gtatgtacagCTCCAACCACTTATGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAG
EST: gi|211142180|gb|FL083863.1|FL083863
EST:     CTACTGGTCCTCGAGCAAACACATACACCCCTGAGTTCCTCACCAAG                         CTCCAACCACTTATGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAG
genomic: CTACTGGTCCTCGAGCAAACACATACACCCCTGAGTTCCTCGCCAAGgttagtgtac ... gtatgtacagCTCCAACCACTTATGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAG