1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTGgtgagatttttatgtggttttagtaattttctatatgtgcttgtttgggtagcccctgaataccttcatttagcacatcagaataccttagtgcttttct...
species | Zea mays |
transcript | GRMZM2G110834_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG GTATTTGGACTGGAATGAGAACTGTGCGGTACTTCGATGGGAGGACATACGEST: gi|91869156|gb|EB400279.1|EB400279
genomic: AGCATTGTCCTAGACATATTGATCTGCAATTGGTTTGgtgagatttt ... tatggttcagGTATTTGGACTGGAATGAGAACTGTGCGGTACTTCGATGGGAGGACATACG
EST: CCTAGACATATTGATCTGCAATTGGTTTG GTATTTGGACTGGAATGAGAACTGTGCGGTACTTCGATGGGAGGACATACGEST: gi|74231927|gb|DT639841.1|DT639841
genomic: CCTAGACATATTGATCTGCAATTGGTTTGgtgagatttt ... tatggttcagGTATTTGGACTGGAATGAGAACTGTGCGGTACTTCGATGGGAGGACATACG
EST: GTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG GTATTTGGACTGGAATGAGAACTGTGCGGTACTTCGATGGGAGGACATACGEST: gi|71318559|gb|DR796040.1|DR796040
genomic: GTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTGgtgagatttt ... tatggttcagGTATTTGGACTGGAATGAGAACTGTGCGGTACTTCGATGGGAGGACATACG
EST: GTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG GTATTTGGACTGGAATGAGAACTGTGCGGTACTTCGATGGGAGGACATACG
genomic: GTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTGgtgagatttt ... tatggttcagGTATTTGGACTGGAATGAGAACTGTGCGGTACTTCGATGGGAGGACATACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTGgtgagatttttatgtggttttagtaattttctatatgtgcttgtttgggtagcccctgaataccttcatttagcacatcagaataccttagtgcttttct
- - - - - - - - - - - - - - - - - - - TGGTGG