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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGTTATCGCTCATATCCTCGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTGTTATCAATTGGGTTTGAATTAATGGAGgtatactctttatgttgtggtcaaataactcttgacttgtgctttccaaacccaggttcctaatgtagtgttacatgtattgcag

Basic information

species Zea mays
transcript GRMZM2G110834_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 7
GTTTGTTATCGCTCATATCCTCGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTGTTATCAATTGGGTTTGAATTAATGGAGgtatactctttatgttg--tggtcaaataactcttgacttgtgctttccaaacccaggttcctaatgtagtgttacatgtattgcag
||||||||| || |||||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||  |||||||||||| |  || || ||    | |||| | | | ||| ||| ||  |||  || | || ||||| |  |||| | ||||||  |||||
GTTTGTTATTGCCCATATCCTTGGATGGTGGGGGAAGGCTATAATGATAAGAAACCAACCACTTTTATGGGTATTATCAATTGGCTTTGAGCTAATGGAGgtatgcatttaatcttacacgatcaatttatttttggcttctgtcttctgaatctagattccttacatagtttcacatgtcctgcag

upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 8
GTTTGTTATCGCTCATATCCTCGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTGTTATCAATTGGGTTTGAATTAATGGAGgtatactct---------------ttatgttgtggtcaaataa------ctcttgacttgtgctttcc--aaacccaggttcctaatgtagtgt---tacatgtattgcag---------------------------------
 |||||| | |||||| |  | ||||||||||| ||||| ||| |||| || || ||||| ||| | ||||||||||| ||||| ||||| ||  ||||||||  | ||                | || | |  ||| |||        | | |  | |||| | |   || |     ||  |  | |  | |   || || | ||| |                                  
ATTTGTTCTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAACCCCTTCTTTGGGTGTTATCCATTGGTTTTGAGTTGGTGGAGgtaatccctgatctgattaatacactctgattttttcacataggtgtggttgtgggttagtgcatccgtaaagcttgattttttgttttgatatatctatatcttttgaattgcttacataccattctgtgttggcatcttcag

upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 10
GTTTGTTATCGCTCATATCCTCGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTGTTATCAATTGGGTTTGAATTAATGGAGgtatactctt----------tatgttgtggt-----caaataa------ctcttgacttgtgctttccaaacccaggttcctaatgtagtgttacatgtattgcag------------------------------------
 |||||| | |||||| |  | ||||||||||| ||||| ||| |||| || || || || ||| | ||||||||||||||||| ||||| ||  ||||||||  | |||          ||   |  | |     || |||        | | |  | |||| | |  ||  |  |||  |  | |  | | |  | ||| |                                       
ATTTGTTTTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAGCCCCTTCTTTGGGTGTTATCAATTGGTTTTGAGTTGGTGGAGgtaagcccttatctgattaatacactccgattttttcacataggtgtggttatgggttagtgcatccataaagcttgtttttcttttgatat-atctatatcgtttgaattgcttacataacatctgtgttgtaatcttcag

upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv17s0000g03010.t01 (Vitis vinifera), 5'ss of exon 7
GTTTGTTATCGCTCATATCCTCGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTGTTATCAATTGGGTTTGAATTAATGGAGgtatactctttatgttgtgg---tcaaataact-cttgacttgtgctt---tccaaacccaggttcctaatgtagtg---ttacatgtattgcag------
 |||||  | ||||||||| | || |||||||| || || |||||||| || || ||||| ||||| ||||| || ||| ||||||||||  ||||||||||||  |||| |||||||     ||| | ||   |  |  || |||||   | ||  |    | |  || | || ||   ||     | || ||       
ATTTGTGCTTGCTCATATCTTTGGTTGGTGGGGAAAAGCCATAATGATCCGCAATCAACCTCTTTTATGGGTTTTGTCATTTGGGTTTGAGCTAATGGAGgtatgttctt-atgttgttcacttcacaaaatagcacggtttctgcttctgttcattcttttgcttttattttattgatttttttccttttccaaaaaaat

upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 8
GTTTGTTATCGCTCATATCCTCGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTGTTATCAATTGGGTTTGAATTAATGGAGgtatactctttatgttgtggtcaaataactcttgacttgtgctttccaaacccaggttcctaatgtagtgttacatgtattgcag-----------------------------------------------------------------------
 |||||| | ||||||||  | |||||||||||||||||||||||||| || || || || ||  | |||||| | |||||||| |||||  ||||||||||    |  |  || | || | |  | | | |||  || ||| |   |        |   |||| ||   ||  |||| |   |                                                                        
ATTTGTTGTGGCTCATATATTTGGATGGTGGGGTAAGGCTATAATGATTCGCAATCAGCCCCTCCTATGGGTGCTGTCAATTGGATTTGAGCTAATGGAGgtcagtttct--tggtctgataatgtta-ttttgtgttttgcctcttaggttgtcatggttaatcta-ccttgtatgtctaagaatgtgctcatgtttctgttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74231927|gb|DT639841.1|DT639841
EST:     CAATTGGGTTGGAATTAATGGAG                         CTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGC
genomic: CAATTGGGTTTGAATTAATGGAGgtatactctt ... tgtattgcagCTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGC