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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGGCGTGCTTTGATGGATGAGATGGCTATCGTCGCCACAAAGGAATACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttcacttttctttgctcgtgttttctcttttctagacaccttcacttgtctttatattgtttgtgcaattaccactatgagagcttggttgta...

Basic information

species Zea mays
transcript GRMZM2G110714_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g55350.1 (Oryza sativa), 5'ss of exon 10
AGAATGGCGTGCTTTGATGGATGAGATGGCTATCGTCGCCACAAAGGAATACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttcacttttctttgctcgtgttttctctttt----ctagacaccttcacttgtctttatattgtttgtgcaattaccactatgagagcttggttgta
|||||||||||||||||||||||| |||||    || || ||||| ||||||||||| || || ||  | ||  | || ||||||||||| ||||||||||||||| |||  ||||   |        ||| | ||||     || | |  | |  ||   |||| |   ||| |||  |      |   | ||||   ||| |
AGAATGGCGTGCTTTGATGGATGAAATGGCCGCTGTTGCTACAAAAGAATACCGGTCCATTGTCTTCCAAGAGGCACGATTTGTTGAATATTTCCGCCTTgtaagtattctttttttaataacttcagtttttgttttatgcttataaaaatactgttcattttaaaccttttatgctgtc----ttgaaatagctatcttgaa

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 9
AGAATGGCGTGCTTTGATGGATGAGATGGCTATCGTCGCCACAAAGGAATACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttcacttttctttgctcgtgttttctcttttctagacaccttcacttgtctttatattgtttgtgcaattaccactatgagagcttggttgta-------
|||||||||||||||||||||| |||||||| || | || ||  |||||||||| || || |||||  ||||||| ||||||||||| || |||||||| ||||| |  ||| |||  |        |  |    |   ||  ||  || | || |  | | ||    || |   |||        | | |||| ||||        
AGAATGGCGTGCTTTGATGGATCAGATGGCTGTCATTGCTACTGAGGAATACCGTTCCATTGTATTCAAGGAACCACGCTTTGTTGAGTATTTCCGCCTGgtaag-gaccacatttagtaaacaacttaattaagtacttattca--ttaagttcttatcagatgacatgagaccttatt----caaaaacttgattgtgaaacttg

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA12G35840.1 (Glycine max), 5'ss of exon 8
AGAATGGCGTGCTTTGATGGATGAGATGGCTATCGTCGCCACAAAGGAATACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttcacttttctttgctcgtgttttctcttttctagacaccttcacttgtctttatattgtttgtgcaattaccactatgagagcttggttgta-------
|||||||||||||||||||||| |||||||| || | || ||  |||||||||| || || |||||  ||||||| ||||||||||| || |||||||| ||||| |  ||| |||  |        |  ||   |   ||  ||  || | || |  | | ||    | ||   ||   | ||    | |||| ||||        
AGAATGGCGTGCTTTGATGGATCAGATGGCTGTCATTGCTACTGAGGAATACCGTTCCATTGTATTCAAGGAACCACGCTTTGTTGAGTATTTCCGCCTGgtaag-gaccacatttagtaaacaacttaatcaagtacttattca--ttgagttcttatcagatgacatatgagcttgttaata----aacttgattgtgaaacatg

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA06G33380.1 (Glycine max), 5'ss of exon 8
AGAATGGCGTGCTTTGATGGATGAGATGGCTATCGTCGCCACAAAGGAATACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttc------acttttctttgctcgtgttttctcttttctagacacct-tcacttgtctttatatt-gtttgtgcaattaccactatgagagcttggttgta
||||||||| ||||||||||||||||||||| || | |||||  |||| |||||||| || || ||  | ||||| || |||||||| || |||||||| |||||  | |      | ||   ||   |    ||||   |  | || | |  | |      | || || || ||||||| ||       | |||  | |        
AGAATGGCGGGCTTTGATGGATGAGATGGCTGTCATTGCCACTGAGGAGTACCGGTCCATTGTGTTCAAAGAACCACGATTTGTTGAGTATTTCCGCCTGgtaaggttactacaggaattggtttaaatttatttttaattcctataaataaatattgtgaattttgattttagtttgtgtaaaatgttttttgatggtt--------

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA20G09810.1 (Glycine max), 5'ss of exon 9
AGAATGGCGTGCTTTGATGGATGAGATGGCTATCGTCGCCACAAAGGAATACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttcactt----ttctttgctcgtgttttctcttttc-tagacaccttcacttgtctttatattgtttgtgcaattaccactatgagagcttggttgta
 |||||| | ||||||||||||||||||||| || | |||||  |||| |||||||| || || ||  | ||||| || |||||||| || |||||||| |||||  | |        ||  ||     ||||||  ||| |  || | |   | | || |  || || |    ||  |||      | |  |   |||||    
GGAATGGAGGGCTTTGATGGATGAGATGGCTGTCATTGCCACTGAGGAGTACCGGTCCATTGTGTTCAAAGAACCACGATTTGTTGAGTATTTCCGCCTGgtaaggttcctacagaaattggttaaatatgtttttacttcttataaatatggtgaattttgattttagttcgggtaaaatgttttttgtt-ggttttggt----

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv12s0028g02180.t01 (Vitis vinifera), 5'ss of exon 8
AGAATGGCGTGCTTTGATGGATGAGATGGCTATCGTCGCCACAAAGGAATACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttcacttttctttgctcgtgttttctcttttctagacaccttcacttgtctttatattgtttgtgc-aattaccactatgagagcttggttgta-
||||||||||||  | ||||||||||||||| || | ||||| |||||||| || || || || ||  ||||||| |||||||||||||| |||||||| |||||| |     | | | | |     | ||     |   |||     |   |  ||  ||   | | || |   ||   |   ||   || | | | ||  
AGAATGGCGTGCACTCATGGATGAGATGGCTGTCATTGCCACCAAGGAATATCGTTCCATTGTCTTCCAGGAACCCCGCTTTGTTGAATATTTCCGCCTGgtaagtttgattatatttctaccaacttcttggaggtctcagaa--tgttgttgatcaatagcatatatgagttgatcttctgcattctagatcgatagttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211502934|gb|FL212597.1|FL212597
EST:     ACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTT                         GCAACGCCAGAGATGGAGTATGGCAGGATGAACATCGGAAGCAGGCCATCG
genomic: ACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttc ... tttgaaacagGCAACGCCAGAGATGGAGTATGGCAGGATGAACATCGGAAGCAGGCCATCG
EST: gi|211505276|gb|FL212599.1|FL212599
EST:     ACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTT                         GCAACGCCAGAGATGGAGTATGGCAGGATGAACATCGGAAGCAGGCCATCG
genomic: ACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttc ... tttgaaacagGCAACGCCAGAGATGGAGTATGGCAGGATGAACATCGGAAGCAGGCCATCG
EST: gi|211505277|gb|FL212600.1|FL212600
EST:     ACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTT                         GCAACGCCAGAGATGGAGTATGGCAGGATGAACATCGGAAGCAGGCCATCG
genomic: ACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttc ... tttgaaacagGCAACGCCAGAGATGGAGTATGGCAGGATGAACATCGGAAGCAGGCCATCG
EST: gi|26457670|gb|CA829253.1|CA829253
EST:     ACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATATTTCCGCCTT                         GCAACGCCAGAGATGGAGTATGGCAGGATGAACATCGGAAGCAGGCCATCG
genomic: ACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttc ... tttgaaacagGCAACGCCAGAGATGGAGTATGGCAGGATGAACATCGGAAGCAGGCCATCG
EST: gi|211502933|gb|FL212596.1|FL212596
EST:     ACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTT                         GCAACGCCMGAGATGGAGTATGGCAGGATGAACATCGGAAGCAGGCCATCG
genomic: ACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttc ... tttgaaacagGCAACGCCAGAGATGGAGTATGGCAGGATGAACATCGGAAGCAGGCCATCG
EST: gi|60353908|gb|DN220881.1|DN220881
EST:     ACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTT                         GCAACGCCAGAGATGGAGTATGGCAGGATGAACATCGGAAGCAGGCCATCG
genomic: ACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttc ... tttgaaacagGCAACGCCAGAGATGGAGTATGGCAGGATGAACATCGGAAGCAGGCCATCG