1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGAGGTCACCAGAGCAGGGGCAACGCAGAATCAGGCGCCCGTTCTCTGTTGCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAGgtatagtttatttattccactcgttcgacctgacagaatttcatggcttctgtattctcactgtatggttatggatatcatgtag
species | Zea mays |
transcript | GRMZM2G110309_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAG GTGGCGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGTEST: gi|32796142|gb|CD948378.1|CD948378
genomic: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAGgtatagttta ... tatcatgtagGTGGCGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGT
EST: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAG GTGGCGAGATGTTAEST: gi|211166794|gb|FK981048.1|FK981048
genomic: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAGgtatagttta ... tatcatgtagGTGGCGAGATGTTA
EST: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAG GTGGCGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGTACCTAEST: gi|16925516|gb|BM078584.1|BM078584
genomic: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAGgtatagttta ... tatcatgtagGTGGCGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGTACCTA
EST: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAG GTGGCGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGTACCTAEST: gi|32796753|gb|CD948989.1|CD948989
genomic: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAGgtatagttta ... tatcatgtagGTGGCGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGTACCTA
EST: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAG GTGGCGAGATGTTAEST: gi|71768291|gb|DR966228.1|DR966228
genomic: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAGgtatagttta ... tatcatgtagGTGGCGAGATGTTA
EST: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAG GTGGCGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGTACCTAEST: gi|32789721|gb|CD941957.1|CD941957
genomic: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAGgtatagttta ... tatcatgtagGTGGCGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGTACCTA
EST: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAG GTGGCGAGATGTTAEST: gi|14245205|gb|BG873787.1|BG873787
genomic: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAGgtatagttta ... tatcatgtagGTGGCGAGATGTTA
EST: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAG GTGGCGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGTACCTAEST: gi|32799039|gb|CD951275.1|CD951275
genomic: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAGgtatagttta ... tatcatgtagGTGGCGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGTACCTA
EST: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAG GTGGCGAGACGTTAEST: gi|32921260|gb|CF026072.1|CF026072
genomic: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAGgtatagttta ... tatcatgtagGTGGCGAGATGTTA
EST: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAG GTGGCGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGTEST: gi|32921005|gb|CF025817.1|CF025817
genomic: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAGgtatagttta ... tatcatgtagGTGGCGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGT
EST: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAG GTGGTGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGT
genomic: GCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAGgtatagttta ... tatcatgtagGTGGCGAGATGTTAAACTTCGCGCGTTTGACAATGCGAAGCACCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGTCACCAGAGCAGGGGCAACGCAGAATCAGGCGCCCGTTCTCTGTTGCTGAAGTAGAAGCACTTGTGCTCGCAGTCGAAAAGCTTGGAACCGGAAGgtatagtttatttattccactcgttcgacctgacagaatttcatggcttctgtattctcactgtatggttatggatatcatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC