1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGGTGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAACTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttcattctactcgtgattccagatccttttatgtgcttaactcgtactcaaacacaggattttgaatatgtgaacttctgcatgaaacctttataggctccatgccttgagttgatatggcaatttattggccgtatcctaggccctggaagctgaccaccttttcccccctccag
species | Zea mays |
transcript | GRMZM2G110185_T03 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|60342770|gb|DN209743.1|DN209743
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|78085798|gb|DV514191.1|DV514191
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|32940894|gb|CF045713.1|CF045713
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|60350973|gb|DN217946.1|DN217946
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|12973054|gb|BG268289.1|BG268289
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: ATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|29129891|gb|CB380595.1|CB380595
genomic: ATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|1298504|gb|W21754.1|W21754
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: AAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCNCCCTGGTCGCTTGGACAGAAAEST: gi|60344174|gb|DN211147.1|DN211147
genomic: AAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|33104358|gb|CF064318.1|CF064318
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|211078711|gb|FL469455.1|FL469455
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|60398345|gb|DN231161.1|DN231161
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|1298502|gb|W21752.1|W21752
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|12968378|gb|BG265324.1|BG265324
genomic: GAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|211007573|gb|FL233622.1|FL233622
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|32849113|gb|CD988794.1|CD988794
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|60397964|gb|DN230780.1|DN230780
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAAEST: gi|37376995|gb|CF625066.1|CF625066
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
EST: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG GCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttc ... ccccctccagGCCTGATACCTTGGATCCTGCACTTCTGCGCCCTGGTCGCTTGGACAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAACTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttcattctactcgtgattccagatccttttatgtgcttaactcgtactcaaacacaggattttgaatatgtgaacttctgcatgaaacctttataggctccatgccttgagttgatatggcaatttattggccgtatcctaggccctggaagctgaccaccttttcccccctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG