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ACAATTTGTTAGGGCTGAGATGCTTCCAAGTGGGTATTTAGTTCGCCCATGCGAAGGTGGAGGATCAATTGTGCATATAGTGGACCATCTAGATCTCGAAgtctggttctcactttttattttaattttaatgttttgatgctgttagtctgtatgttgtccattaatgatcgtattgggtttcatctttcag
species | Zea mays |
transcript | GRMZM2G109987_T05 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GACCATCTAGATCTCGAA GCATGGAGTGTTCCTGAAGTGCTTCGACCACTGTATGAGTCTTCTAGAGTTEST: gi|93012109|gb|EB637629.1|EB637629
genomic: GACCATCTAGATCTCGAAgtctggttct ... catctttcagGCATGGAGTGTTCCTGAAGTGCTTCGACCACTGTATGAGTCTTCTAGAGTT
EST: GCGAAGGTGGAGGATCAATTGTGCATATAGTGGACCATCTAGATCTCGAA GCATGGAGTGTTCCTGAAGTGCTTCGACCACTGTATGAGTCTTCTAGAGTTEST: gi|76923031|gb|DV169300.1|DV169300
genomic: GCGAAGGTGGAGGATCAATTGTGCATATAGTGGACCATCTAGATCTCGAAgtctggttct ... catctttcagGCATGGAGTGTTCCTGAAGTGCTTCGACCACTGTATGAGTCTTCTAGAGTT
EST: GCGAAGGTGGAGGATCAATTGTGCATATAGTGGACCATCTAGATCTCGAA GCATGGAGTGTTCCTGAAGTGCTTCGACCACTGTATGAGTCTTCTAGAGTT
genomic: GCGAAGGTGGAGGATCAATTGTGCATATAGTGGACCATCTAGATCTCGAAgtctggttct ... catctttcagGCATGGAGTGTTCCTGAAGTGCTTCGACCACTGTATGAGTCTTCTAGAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATTTGTTAGGGCTGAGATGCTTCCAAGTGGGTATTTAGTTCGCCCATGCGAAGGTGGAGGATCAATTGTGCATATAGTGGACCATCTAGATCTCGAAgtctggttctcactttttattttaattttaatgttttgatgctgttagtctgtatgttgtccattaatgatcgtattgggtttcatctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA