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GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatatatgactgcaaccatgttaccattgccgtaataatatgattattgcacatctaaaatctcactttgcactttcag
species | Zea mays |
transcript | GRMZM2G109383_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCGCTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGTEST: gi|211126281|gb|FL366445.1|FL366445
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAA-GCTGCTGACCTCCCCAAAGTTTACATTCTG T-ATGATGCACTCCATGGTGEST: gi|67035308|gb|CO463841.1|CO463841
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTG
EST: ACTTCGAAAGCA-TAAAAA-GCTGCTGACCTCCC-AA-GTTTACATTCTG GTATGATGCACTCCATGGTGNTGCGGGAGCTTATGCCCAACACATCTTTGTEST: gi|67024904|gb|CO453653.1|CO453653
genomic: ACTTCGAA-GCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGTEST: gi|60351626|gb|DN218599.1|DN218599
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGTEST: gi|149013083|gb|EE042782.2|EE042782
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCACTCCATGEST: gi|31353391|gb|CD437748.1|CD437748
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATG
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCGCTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGTEST: gi|67022599|gb|CO451348.1|CO451348
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAAA-CTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGTEST: gi|67041650|gb|CO467905.1|CO467905
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGTEST: gi|31353888|gb|CD438245.1|CD438245
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCGCTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGTEST: gi|60351436|gb|DN218409.1|DN218409
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGTEST: gi|149017022|gb|EE045668.2|EE045668
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACAEST: gi|31356494|gb|CD440851.1|CD440851
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACA
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCGCTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTEST: gi|67018536|gb|CO447285.1|CO447285
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTT
EST: GACTTCGAAGCAATAAAAAA-CTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGTEST: gi|67025909|gb|CO454658.1|CO454658
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGTEST: gi|84980113|gb|DW530462.1|DW530462
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCGCTCCATGGTGTTGCGGGAGCTTATGCCAAACACATEST: gi|148945380|gb|EC890603.2|EC890603
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACAT
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCACTCCATGGTGGTGCGGGAGCTTATGCCAAEST: gi|211101215|gb|FL335616.1|FL335616
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAA
EST: ACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAAGTT-ACATTCTG TTATGATGCACTCCATGGNTGT-GCGGGGAGCTTATGCCAAACACAEST: gi|149099504|gb|EE185542.2|EE185542
genomic: ACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAA-GTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGG-TGTTGCGGG-AGCTTATGCCAAACACA
EST: ACTTCGAAGCAATAAAAA-GCTGCTGACCCTCCCCAA-GTTTACATTCTG GTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGTEST: gi|149014023|gb|EE043541.2|EE043541
genomic: ACTTCGAAGCAATAAAAAAGCTGCTGACC-TCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGGAGCTTATGCCAAACACATCTTTGT
EST: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG TTATGATGCACTCCATGGTGTTGCGGG
genomic: GACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatat ... gcactttcagTTATGATGCACTCCATGGTGTTGCGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTGgtattcatatatgactgcaaccatgttaccattgccgtaataatatgattattgcacatctaaaatctcactttgcactttcag
- - - - - - - - AAGCAA
- - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - GCTGCT