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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAGCATTGATGCGTACAGAATAAATTCAGATCCACATGACATAATGGCAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtccagctgctttgtctcaagttctccatgcattttgtcaacagattttgtgtagctgagacgttatgaaggactatggggtgcagatactgcta...

Basic information

species Zea mays
transcript GRMZM2G108849_T04
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108849_T04 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g24550.4 (Oryza sativa), 5'ss of exon 9
TTTCAGCATTGATGCGTACAGAATAAATTCAGATCCACATGACATAATGGCAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtccagctgct----ttgtctcaagttctccatgcattttgtcaacagattttgtgtagctgagacgttatgaaggactatggggtgcagatactgcta-
||||||  |  |||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||   |  |  | ||    || |  || | |||     ||  ||||  |  |   |||  |||| || |  | |  | ||||| | || ||||| | |||||  
TTTCAGTGTCAATGCATACAGAGTAAATTCTGATCCACATGACATAATGGCAGAGGTCTACCAAAATGGCCCTGTAGAAGTTGCTTTCACCGTTTATGAGgtaccattgactttctattttttttccatgctctttcaccaaattgttgattg---ttggttagcagaaa--tcaaaatggactgtaggctgcagttgctgcttt

upper sequence: GRMZM2G108849_T04 (Zea mays), 5'ss of exon 8
lower sequence: AT1G02305.1 (Arabidopsis thaliana), 5'ss of exon 8
TTTCAGCATTGATGCGTACAGAATAAATTCAGATCCACATGACATAATGGCAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtccagctgctttgtctcaagttctccatgcattttgtcaacagattttgtgtagctgagacgttatgaaggactatggggtgcagatactgcta
||   |  ||  ||||||||   | |  ||  | ||  ||||||| |||||||| || ||||||||||| ||||| || ||||| ||||| |||||||||||||   | || |      |||  |||  || | | || |  | |     | || || | ||   || |  | | | |   |   || |   ||| |   
TTATGGTGTTAGTGCGTACAAGGTCAGATCTCACCCTGATGACATTATGGCAGAAGTTTACAAAAATGGACCTGTTGAGGTTGCCTTCACTGTTTACGAGgtaaatactaggt------tctagagtgatcaaag-atatgatta-----tattatggaactcc-acatgttcatgtatctttctgttcttctacag---

upper sequence: GRMZM2G108849_T04 (Zea mays), 5'ss of exon 8
lower sequence: AT1G02300.1 (Arabidopsis thaliana), 5'ss of exon 7
TTTCAGCATTGATGCGTACAGAATAAATTCAGATCCACATGACATAATGGCAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtccagctgctttgtctcaagttctccatgcattttgtcaacagattttgtgtagctgagacgtt-atgaaggactatggggtgcagatactgcta
 |   |  | |  || |||||||| ||| | || || || ||||| ||||| ||||| ||||| ||||| ||||| || |||||||| || |||||||||||||||   |     ||||  | |     || |  ||| |||   | |   || ||| ||   | |  || ||| |    | ||   | |||         
CTATGGTGTCGGCGCATACAGAATCAATCCTGACCCTCAAGACATTATGGCTGAGGTTTACAAGAATGGACCTGTCGAGGTTGCTTTTACCGTTTACGAGgtaatgaaaaagatttttgattga-----tcaaaccatattgattatat-cttggtgaagtccacattttcatgtatctttttgttcttcag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13177947|gb|BG349205.1|BG349205
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|6095470|gb|AW120137.1|AW120137
EST:     GAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: GAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|76282755|gb|DV022323.1|DV022323
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACCAGCACAT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACAT
EST: gi|6095737|gb|AW120404.1|AW120404
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGNGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|5510799|gb|AI857183.1|AI857183
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCCCAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|33103523|gb|CF063483.1|CF063483
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|31354590|gb|CD438947.1|CD438947
EST:     CAGAGGTCTACAAAAACGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|211491805|gb|FL092420.1|FL092420
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|213184041|gb|FM183748.1|FM183748
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATC
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATC
EST: gi|78022002|gb|DV490389.1|DV490389
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|44901164|gb|CK827709.1|CK827709
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|60357237|gb|DN224210.1|DN224210
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|33101787|gb|CF061747.1|CF061747
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|31355458|gb|CD439815.1|CD439815
EST:     CAGAGGTCTACAAAAACGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|18963343|gb|BM660382.1|BM660382
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|60353949|gb|DN220922.1|DN220922
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|5005885|gb|AI711947.1|AI711947
EST:     GTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: GTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|60347557|gb|DN214530.1|DN214530
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATTTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|32797001|gb|CD949237.1|CD949237
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|32796767|gb|CD949003.1|CD949003
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACGGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|5922141|gb|AW055411.1|AW055411
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|24769380|gb|CA404509.1|CA404509
EST:     CAGAGGTCTACAAAAACGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|6020622|gb|AW065655.1|AW065655
EST:     GCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGNGGCATT
genomic: GCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|5847576|gb|AW000655.1|AW000655
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAG
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAG
EST: gi|14203538|gb|BG837215.1|BG837215
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|60395804|gb|DN228674.1|DN228674
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|18385054|gb|BM418253.1|BM418253
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCG
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCG
EST: gi|60400644|gb|DN233451.1|DN233451
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|60338736|gb|DN205709.1|DN205709
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|5525631|gb|AI861524.1|AI861524
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|67013050|gb|CO441799.1|CO441799
EST:     AAAATGGTCCTGTAGAAGTTGCTTTCACAGTTCACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: AAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|5525441|gb|AI861334.1|AI861334
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|16377920|gb|BI992190.1|BI992190
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|14203094|gb|BG836771.1|BG836771
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|211495925|gb|FL479314.1|FL479314
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|113702838|gb|EE680342.1|EE680342
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|6012616|gb|AW062053.1|AW062053
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGG
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGG
EST: gi|60350570|gb|DN217543.1|DN217543
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|211486033|gb|FL092385.1|FL092385
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|60348499|gb|DN215472.1|DN215472
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATTTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|32797163|gb|CD949399.1|CD949399
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|5296139|gb|AI783014.1|AI783014
EST:     CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: gi|5922310|gb|AW055599.1|AW055599
EST:     GAAGTTGCTTTCACAGTTTACGAG                         GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: GAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCAGCATTGATGCGTACAGAATAAATTCAGATCCACATGACATAATGGCAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtccagctgctttgtctcaagttctccatgcattttgtcaacagattttgtgtagctgagacgttatgaaggactatggggtgcagatactgcta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT