1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATACgtaagatactaaccttatttatattttgaatattaggagtccaattagtccattttgttagcaactcattgtcaaagtgccttttgacatttctagtccggtacactgacagttgttgcttttgtag
species | Zea mays |
transcript | GRMZM2G107731_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATAC GTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGCAEST: gi|60358220|gb|DN225193.1|DN225193
genomic: CTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATACgtaagatact ... gcttttgtagGTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGCA
EST: CTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATAC GTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGCAEST: gi|37394977|gb|CF634768.1|CF634768
genomic: CTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATACgtaagatact ... gcttttgtagGTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGCA
EST: AGAGAACCATTAC GTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGCEST: gi|213169996|gb|FM189145.1|FM189145
genomic: AGAGAA-CAATACgtaagatact ... gcttttgtagGTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGC
EST: CTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATAC GTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGCAEST: gi|149081200|gb|EE170309.2|EE170309
genomic: CTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATACgtaagatact ... gcttttgtagGTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGCA
EST: CTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATAC GTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACEST: gi|32931571|gb|CF036383.1|CF036383
genomic: CTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATACgtaagatact ... gcttttgtagGTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTAC
EST: CTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATAC GTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGCAEST: gi|149027108|gb|EE046399.2|EE046399
genomic: CTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATACgtaagatact ... gcttttgtagGTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGCA
EST: CTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATAC GTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGCA
genomic: CTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATACgtaagatact ... gcttttgtagGTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATACgtaagatactaaccttatttatattttgaatattaggagtccaattagtccattttgttagcaactcattgtcaaagtgccttttgacatttctagtccggtacactgacagttgttgcttttgtag
- - - - - - - - - GAGGAG
- - - - - - - - - - GGAGCA
- - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA