1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaattccactttatctgatgaactgcgtgctgcctcatttcaattttgtgatgtttgctttcttgtcgttccattcaagcagaaaattatgttc...
species | Zea mays |
transcript | GRMZM2G107362_T04 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|32843443|gb|CD983124.1|CD983124
genomic: CTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACEST: gi|6827684|gb|AW331327.1|AW331327
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCNCAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|5847445|gb|AW000524.1|AW000524
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCT
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaattccactttatctgatgaactgcgtgctgcctcatttcaattttgtgatgtttgctttcttgtcgttccattcaagcagaaaattatgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA