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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGGACATTCAGCATGTGCTGCCAAACTTGCAGCTGGATTATGTGCTGATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTGgtactgtacttatgatcttatatcttttttcacgaaactttttcattgtgcacagtgagcctgaaatgaaatgggtatttatgtatattcttcatattgattgggtctgttgaaaaacag

Basic information

species Zea mays
transcript GRMZM2G107309_T07
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107309_T07 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g06980.2 (Oryza sativa), 5'ss of exon 8
AAATGGACATTCAGCATGTGCTGCCAAACTTGCAGCTGGATTATGTGCTGATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTGgtactgtacttatgatcttatatcttttttcacgaaactttttcattgtgcacagtgagcctgaaa---tga-aatgggtatttatgtatattcttcatattgat------tgggtctgttgaaaaacag
||||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||  ||||||||||||||||||||||||||||| |||||  ||||||||| | ||| ||||||||| |    |     | || |||   | ||||||||   |||  |    ||| | |   |||||   |||| | | ||| |||||      || ||||   | | | |||
AAATGGACACTCAGCATGTGCTGCCAAACTTGCAGCAGGGATATGTGCTGATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATGgtactgtgcatatcatcttatatttgcaattctcgacctcttt---tttgcacagtacacctagacacctgagagttattattttgatatactttgcatgttgatactgactgtgtctaccggagagcag

upper sequence: GRMZM2G107309_T07 (Zea mays), 5'ss of exon 8
lower sequence: Vv17s0000g04120.t01 (Vitis vinifera), 5'ss of exon 11
AAATGGACATTCAGCATGTGCTGCCAAACTTGCAGCTGGATTATGTGCTGATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTGgtact-gtacttatgatcttatatct---tttttcacgaaactttttcattgtgcacagtgagcctgaaatgaaatgggtatttatgtatattcttcatattgattgggtctgttgaaaaacag
 ||||  |||||||||  ||||||    ||||||||||| ||||||||||||||||||  |   ||  | ||||| ||||     ||||| |||||  |||||   | | || ||  |||   | |   |  ||| |  |  || |  || || ||  | ||   | |  ||| ||     ||| || || || |   |  | ||||  || |           
TAATGAGCATTCAGCACTTGCTGCTCGGCTTGCAGCTGGTTTATGTGCTGATCTTGCTTCTGCAATTTTTTCTGGACGTGCCAAAAATGGTTTTGCTTTGgtatgagaaattttgcactttcttttaagtcattcccagatgttgtcaatagtacatggggaaatttag-tgatatatagttttttgaat-ttttctttcctaattgactcag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60397976|gb|DN230792.1|DN230792
EST:     ATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTG                         GTAAGACCTCCTGGGCATCATGCAGGGGTGAAGCAAGCAATGGGGTTTTGT
genomic: ATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTGgtactgtact ... tgaaaaacagGTAAGACCTCCTGGGCATCATGCAGGGGTGAAGCAAGCAATGGGGTTTTGT
EST: gi|211416077|gb|FK952655.1|FK952655
EST:     ATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTG                         GTAAGACCTCCTGGGCATCATGCAGGGGTGAAGCAAGCAATGGGGTTTTGT
genomic: ATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTGgtactgtact ... tgaaaaacagGTAAGACCTCCTGGGCATCATGCAGGGGTGAAGCAAGCAATGGGGTTTTGT
EST: gi|6564072|gb|AW231694.1|AW231694
EST:     ATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTT-GCGCTG                         GTAAGACCTCCTGG-CACCATGC
genomic: ATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTGgtactgtact ... tgaaaaacagGTAAGACCTCCTGGGCATCATGC
EST: gi|78112912|gb|DV531306.1|DV531306
EST:     ATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTG                         GTAAGACCTCCTGGGCATCATGCAGGGGTGAAGCAAGCAATGGGGTTTTGT
genomic: ATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTGgtactgtact ... tgaaaaacagGTAAGACCTCCTGGGCATCATGCAGGGGTGAAGCAAGCAATGGGGTTTTGT
EST: gi|211416082|gb|FK952660.1|FK952660
EST:     ATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTG                         GTAAGACCTCCTGGGCATCATGCAGGGGTGAAGCAAGCAATGGGGTTTTGT
genomic: ATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTGgtactgtact ... tgaaaaacagGTAAGACCTCCTGGGCATCATGCAGGGGTGAAGCAAGCAATGGGGTTTTGT