Sequence
atgc intronic sequence ATGC exonic sequenceGGTGAAGCAAGCAATGGGGTTTTGTCTTCACAACAATGCAGCAGTAGCTGCGTTAGCTGCAAAAAGAGCAGGTGCCAAGAAAGTCCTCATAGTTGACTGGgtaatgatcttgcatagttcttttgtactacctattttatagtcaataatgctaattaatgttgattatctcatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G107309_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g06980.2 (Oryza sativa), 5'ss of exon 9
GGTGAAGCAAGCAATGGGGTTTTGTCTTCACAACAATGCAGCAGTAGCTGCGTTAGCTGCAAAAAGAGCAGGTGCCAAGAAAGTCCTCATAGTTGACTGGgtaatgatc-ttgcatagtt-cttttgtact---acc----tattttatagtca----------------------ataatgct---aattaatgttgatt-atctcatcag----------------------
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GGTGAAACAAGCCATGGGTTTTTGTCTTCACAATAATGCAGCAGTGGCTGCATTAGCTGCACAAAGAGCTGGTGCCAAGAAAGTCTTAATAGTTGACTGGgtaatgctagttacaagtttgcatttgaacttataccattgcattctgttggcatcatggacccccccaaaaaaagatagtgcctcaaatggatgttaatccatctcatcagtggtgctcaattgttgttgcag
upper sequence: GRMZM2G107309_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT3G18520.1 (Arabidopsis thaliana), 5'ss of exon 10
GGTGAAGCAAGCAATGGGGTTTTGTCTTCACAACAATGCAGCAGTAGCTGCGTTAGCTGCAAAAAGAGCAGGTGCCAAGAAAGTCCTCATAGTTGACTGGgtaatgatcttgcatagttcttttgtactacct-attttatagtcaataatgctaattaatgttgattatctcatcag------------------------------------------
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CGTCAGGCATGCTATGGGGTTTTGCCTTCACAATAATGCAGCCGTTGCTGCATTAGTAGCACAAGCAGCAGGGGCAAAGAAGGTGCTGATTGTGGACTGGgtaatgttactg-ataactct---aaactgggtgattttgtagatcttcaaacttttttaattcgttgtactctgcattgtgtggtttggctcatatcaatgttatatctaccgttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32863146|gb|CF002828.1|CF002828EST: CGTTAGCTGCAAAAAGAGCAGGTGCCAAGAAAGTCCTCATAGTTGACTGG TAGGTTCTCAATTGTTGTTACAGGATGTGCACCATGGAAATGGCACACAAG
genomic: CGTTAGCTGCAAAAAGAGCAGGTGCCAAGAAAGTCCTCATAGTTGACTGGgtaatgatct ... atctcatcagTAGGTTCTCAATTGTTGTTGCAGGATGTGCACCATGGAAATGGCACACAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGAAGCAAGCAATGGGGTTTTGTCTTCACAACAATGCAGCAGTAGCTGCGTTAGCTGCAAAAAGAGCAGGTGCCAAGAAAGTCCTCATAGTTGACTGGgtaatgatcttgcatagttcttttgtactacctattttatagtcaataatgctaattaatgttgattatctcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA