1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTTTACACCGTTCGGTGGTGGCCCCCGGCTCTGCCCAGGATCAGAGCTCGCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAGgtaaataaacaaaggacggtgttattagtcctaactgagttggtggatttttggcaaaccaaagcacggtacacctgaacatcatgcaaaattctaacca...
species | Zea mays |
transcript | GRMZM2G107199_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAG ATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTTEST: gi|78026615|gb|DV495002.1|DV495002
genomic: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAGgtaaataaac ... cgccttgcagATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTT
EST: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAG ATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTTEST: gi|211407773|gb|FL477828.1|FL477828
genomic: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAGgtaaataaac ... cgccttgcagATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTT
EST: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAG ATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTTEST: gi|211438834|gb|FL480999.1|FL480999
genomic: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAGgtaaataaac ... cgccttgcagATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTT
EST: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAG ATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTTEST: gi|88747803|gb|DY531944.1|DY531944
genomic: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAGgtaaataaac ... cgccttgcagATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTT
EST: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAG ATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTTEST: gi|86472075|gb|DY238445.1|DY238445
genomic: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAGgtaaataaac ... cgccttgcagATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTT
EST: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAG ATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTTEST: gi|76918467|gb|DV167312.1|DV167312
genomic: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAGgtaaataaac ... cgccttgcagATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTT
EST: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAG ATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTTEST: gi|78089959|gb|DV518333.1|DV518333
genomic: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAGgtaaataaac ... cgccttgcagATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTT
EST: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAG ATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTT
genomic: GCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAGgtaaataaac ... cgccttgcagATGGAGAATTGATGGCGATGACATTCCAATGGCATACCCGTATGTGGAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTACACCGTTCGGTGGTGGCCCCCGGCTCTGCCCAGGATCAGAGCTCGCTAAAGTGGAGACTGCTTTCTTCCTCCATCACCTTGTCCTCAATTATAGgtaaataaacaaaggacggtgttattagtcctaactgagttggtggatttttggcaaaccaaagcacggtacacctgaacatcatgcaaaattctaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccaaa