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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCTAAGTCTGATGGTTTAAGGGGCTCAAgtaagtttccacatgataagggtttagtgctccttcctcatccaatcttctttgcgtataacaaatgtccctgaattacaaatttttttgtaatatttgt...

Basic information

species Zea mays
transcript GRMZM2G107106_T02
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929362|gb|CF034174.1|CF034174
EST:     GGATCTAAGTCTGATGGTTTAAGGGGCTCAA                         AAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGTCTGATGGTTTAAGGGGCTCAAgtaagtttcc ... taattgatagAAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|61119710|gb|DN560671.1|DN560671
EST:     GGATCTAAGTCTGATGGTTTAAGGGGCTCAA                         AAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGTCTGATGGTTTAAGGGGCTCAAgtaagtttcc ... taattgatagAAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|32929980|gb|CF034792.1|CF034792
EST:     GGATCTAAGTCTGATGGTTTAAGGGGCTCAA                         AAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGTCTGATGGTTTAAGGGGCTCAAgtaagtttcc ... taattgatagAAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: gi|71313388|gb|DR793244.1|DR793244
EST:     GGATCTAAGTCTGATGGTTTAAGGGGCTCAA                         AAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGTCTGATGGTTTAAGGGGCTCAAgtaagtttcc ... taattgatagAAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA